Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_03888 and CCNA_00703 are separated by 102 nucleotides CCNA_00703 and CCNA_00704 are separated by 42 nucleotides CCNA_00704 and CCNA_00705 are separated by 151 nucleotides CCNA_00705 and CCNA_00706 are separated by 274 nucleotides CCNA_00706 and CCNA_00707 are separated by 99 nucleotides
CCNA_03888: CCNA_03888 - hypothetical protein, at 761,965 to 762,324
_03888
CCNA_00703: CCNA_00703 - hypothetical protein, at 762,427 to 762,633
_00703
CCNA_00704: CCNA_00704 - hypothetical protein, at 762,676 to 762,873
_00704
CCNA_00705: CCNA_00705 - hypothetical protein, at 763,025 to 763,315
_00705
CCNA_00706: CCNA_00706 - hypothetical protein, at 763,590 to 764,003
_00706
CCNA_00707: CCNA_00707 - hypothetical protein, at 764,103 to 765,185
_00707
Position (kb) 763
764 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 762.035 kb on + strand, within CCNA_03888 at 762.048 kb on + strand, within CCNA_03888 at 762.067 kb on + strand, within CCNA_03888 at 762.084 kb on + strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.092 kb on - strand, within CCNA_03888 at 762.108 kb on + strand, within CCNA_03888 at 762.111 kb on - strand, within CCNA_03888 at 762.116 kb on - strand, within CCNA_03888 at 762.116 kb on - strand, within CCNA_03888 at 762.157 kb on - strand, within CCNA_03888 at 762.167 kb on - strand, within CCNA_03888 at 762.217 kb on + strand, within CCNA_03888 at 762.238 kb on - strand, within CCNA_03888 at 762.239 kb on + strand, within CCNA_03888 at 762.249 kb on + strand, within CCNA_03888 at 762.256 kb on + strand, within CCNA_03888 at 762.256 kb on + strand, within CCNA_03888 at 762.264 kb on - strand, within CCNA_03888 at 762.279 kb on + strand, within CCNA_03888 at 762.287 kb on - strand, within CCNA_03888 at 762.307 kb on + strand at 762.341 kb on + strand at 762.341 kb on + strand at 762.346 kb on + strand at 762.349 kb on - strand at 762.349 kb on - strand at 762.354 kb on - strand at 762.354 kb on - strand at 762.385 kb on - strand at 762.385 kb on - strand at 762.412 kb on + strand at 762.419 kb on + strand at 762.424 kb on + strand at 762.424 kb on + strand at 762.424 kb on + strand at 762.424 kb on + strand at 762.432 kb on - strand at 762.432 kb on - strand at 762.432 kb on - strand at 762.432 kb on - strand at 762.432 kb on - strand at 762.475 kb on - strand, within CCNA_00703 at 762.480 kb on + strand, within CCNA_00703 at 762.488 kb on - strand, within CCNA_00703 at 762.488 kb on - strand, within CCNA_00703 at 762.501 kb on - strand, within CCNA_00703 at 762.558 kb on - strand, within CCNA_00703 at 762.577 kb on + strand, within CCNA_00703 at 762.577 kb on + strand, within CCNA_00703 at 762.580 kb on - strand, within CCNA_00703 at 762.583 kb on + strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.585 kb on - strand, within CCNA_00703 at 762.590 kb on - strand, within CCNA_00703 at 762.590 kb on - strand, within CCNA_00703 at 762.632 kb on + strand at 762.669 kb on - strand at 762.696 kb on + strand, within CCNA_00704 at 762.696 kb on + strand, within CCNA_00704 at 762.704 kb on - strand, within CCNA_00704 at 762.704 kb on - strand, within CCNA_00704 at 762.704 kb on - strand, within CCNA_00704 at 762.729 kb on + strand, within CCNA_00704 at 762.836 kb on - strand, within CCNA_00704 at 762.847 kb on - strand, within CCNA_00704 at 762.847 kb on - strand, within CCNA_00704 at 762.902 kb on - strand at 762.902 kb on - strand at 762.906 kb on + strand at 762.906 kb on + strand at 762.916 kb on + strand at 762.916 kb on + strand at 762.916 kb on + strand at 762.924 kb on - strand at 762.951 kb on + strand at 762.951 kb on + strand at 762.959 kb on - strand at 762.959 kb on - strand at 762.959 kb on - strand at 762.959 kb on - strand at 762.959 kb on - strand at 763.010 kb on + strand at 763.018 kb on - strand at 763.064 kb on + strand, within CCNA_00705 at 763.072 kb on - strand, within CCNA_00705 at 763.072 kb on - strand, within CCNA_00705 at 763.072 kb on - strand, within CCNA_00705 at 763.105 kb on - strand, within CCNA_00705 at 763.125 kb on + strand, within CCNA_00705 at 763.183 kb on - strand, within CCNA_00705 at 763.263 kb on + strand, within CCNA_00705 at 763.273 kb on + strand, within CCNA_00705 at 763.281 kb on - strand, within CCNA_00705 at 763.300 kb on - strand at 763.305 kb on - strand at 763.322 kb on - strand at 763.322 kb on - strand at 763.324 kb on - strand at 763.342 kb on + strand at 763.373 kb on - strand at 763.394 kb on + strand at 763.397 kb on - strand at 763.420 kb on - strand at 763.502 kb on - strand at 763.513 kb on - strand at 763.575 kb on - strand at 763.580 kb on + strand at 763.580 kb on + strand at 763.581 kb on + strand at 763.582 kb on - strand at 763.596 kb on - strand at 763.613 kb on - strand at 763.623 kb on + strand at 763.624 kb on + strand at 763.624 kb on + strand at 763.626 kb on - strand at 763.631 kb on - strand at 763.631 kb on - strand at 763.632 kb on - strand, within CCNA_00706 at 763.649 kb on + strand, within CCNA_00706 at 763.657 kb on - strand, within CCNA_00706 at 763.676 kb on - strand, within CCNA_00706 at 763.676 kb on - strand, within CCNA_00706 at 763.676 kb on - strand, within CCNA_00706 at 763.680 kb on + strand, within CCNA_00706 at 763.707 kb on + strand, within CCNA_00706 at 763.707 kb on + strand, within CCNA_00706 at 763.720 kb on - strand, within CCNA_00706 at 763.720 kb on - strand, within CCNA_00706 at 763.744 kb on + strand, within CCNA_00706 at 763.773 kb on - strand, within CCNA_00706 at 763.773 kb on - strand, within CCNA_00706 at 763.782 kb on - strand, within CCNA_00706 at 763.829 kb on - strand, within CCNA_00706 at 763.905 kb on + strand, within CCNA_00706 at 763.922 kb on + strand, within CCNA_00706 at 763.925 kb on - strand, within CCNA_00706 at 763.953 kb on - strand, within CCNA_00706 at 763.970 kb on - strand at 764.101 kb on + strand at 764.101 kb on + strand at 764.101 kb on + strand at 764.109 kb on - strand at 764.109 kb on - strand at 764.114 kb on - strand at 764.183 kb on - strand at 764.190 kb on - strand at 764.226 kb on + strand, within CCNA_00707 at 764.247 kb on + strand, within CCNA_00707 at 764.247 kb on + strand, within CCNA_00707 at 764.262 kb on + strand, within CCNA_00707 at 764.262 kb on + strand, within CCNA_00707 at 764.262 kb on + strand, within CCNA_00707 at 764.262 kb on + strand, within CCNA_00707 at 764.262 kb on + strand, within CCNA_00707 at 764.262 kb on + strand, within CCNA_00707 at 764.262 kb on + strand, within CCNA_00707 at 764.267 kb on + strand, within CCNA_00707 at 764.270 kb on - strand, within CCNA_00707 at 764.270 kb on - strand, within CCNA_00707 at 764.270 kb on - strand, within CCNA_00707 at 764.270 kb on - strand, within CCNA_00707 at 764.270 kb on - strand, within CCNA_00707 at 764.274 kb on + strand at 764.275 kb on - strand, within CCNA_00707 at 764.281 kb on + strand, within CCNA_00707 at 764.281 kb on + strand, within CCNA_00707 at 764.304 kb on - strand, within CCNA_00707
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 762,035 + CCNA_03888 0.19 -1.1 762,048 + CCNA_03888 0.23 -1.4 762,067 + CCNA_03888 0.28 +1.0 762,084 + CCNA_03888 0.33 +0.5 762,092 - CCNA_03888 0.35 -0.9 762,092 - CCNA_03888 0.35 +0.6 762,092 - CCNA_03888 0.35 -0.6 762,092 - CCNA_03888 0.35 -0.8 762,092 - CCNA_03888 0.35 -0.7 762,092 - CCNA_03888 0.35 +2.0 762,092 - CCNA_03888 0.35 +1.6 762,108 + CCNA_03888 0.40 +0.9 762,111 - CCNA_03888 0.41 +0.6 762,116 - CCNA_03888 0.42 +0.2 762,116 - CCNA_03888 0.42 +1.3 762,157 - CCNA_03888 0.53 -0.7 762,167 - CCNA_03888 0.56 +0.9 762,217 + CCNA_03888 0.70 +2.0 762,238 - CCNA_03888 0.76 +1.0 762,239 + CCNA_03888 0.76 +1.2 762,249 + CCNA_03888 0.79 -0.0 762,256 + CCNA_03888 0.81 +0.4 762,256 + CCNA_03888 0.81 -1.2 762,264 - CCNA_03888 0.83 -0.6 762,279 + CCNA_03888 0.87 +0.7 762,287 - CCNA_03888 0.89 -0.1 762,307 + +1.6 762,341 + -0.2 762,341 + -1.8 762,346 + -0.3 762,349 - -0.6 762,349 - -0.6 762,354 - -1.6 762,354 - +1.4 762,385 - +1.0 762,385 - -0.3 762,412 + -0.4 762,419 + +0.2 762,424 + +2.6 762,424 + -0.6 762,424 + -0.3 762,424 + -1.3 762,432 - +2.0 762,432 - -0.3 762,432 - -0.8 762,432 - +0.4 762,432 - -0.8 762,475 - CCNA_00703 0.23 -2.1 762,480 + CCNA_00703 0.26 -0.0 762,488 - CCNA_00703 0.29 +1.6 762,488 - CCNA_00703 0.29 -0.1 762,501 - CCNA_00703 0.36 +2.0 762,558 - CCNA_00703 0.63 +1.4 762,577 + CCNA_00703 0.72 +1.4 762,577 + CCNA_00703 0.72 +1.0 762,580 - CCNA_00703 0.74 +0.7 762,583 + CCNA_00703 0.75 +1.9 762,585 - CCNA_00703 0.76 -0.8 762,585 - CCNA_00703 0.76 +1.4 762,585 - CCNA_00703 0.76 -0.0 762,585 - CCNA_00703 0.76 +0.6 762,585 - CCNA_00703 0.76 -0.4 762,585 - CCNA_00703 0.76 +0.6 762,590 - CCNA_00703 0.79 -0.2 762,590 - CCNA_00703 0.79 +0.9 762,632 + +0.5 762,669 - -1.4 762,696 + CCNA_00704 0.10 -1.4 762,696 + CCNA_00704 0.10 -1.1 762,704 - CCNA_00704 0.14 -0.8 762,704 - CCNA_00704 0.14 -2.5 762,704 - CCNA_00704 0.14 +2.6 762,729 + CCNA_00704 0.27 -0.4 762,836 - CCNA_00704 0.81 +0.8 762,847 - CCNA_00704 0.86 -1.1 762,847 - CCNA_00704 0.86 +1.2 762,902 - -0.7 762,902 - +0.2 762,906 + +0.4 762,906 + +1.2 762,916 + +3.6 762,916 + +3.4 762,916 + +3.7 762,924 - -0.1 762,951 + +0.8 762,951 + +1.7 762,959 - +1.6 762,959 - -1.1 762,959 - -0.8 762,959 - -0.9 762,959 - +2.6 763,010 + +0.2 763,018 - +1.7 763,064 + CCNA_00705 0.13 -0.0 763,072 - CCNA_00705 0.16 +1.7 763,072 - CCNA_00705 0.16 +2.4 763,072 - CCNA_00705 0.16 +1.7 763,105 - CCNA_00705 0.27 +2.8 763,125 + CCNA_00705 0.34 -0.2 763,183 - CCNA_00705 0.54 +2.0 763,263 + CCNA_00705 0.82 +0.1 763,273 + CCNA_00705 0.85 -2.0 763,281 - CCNA_00705 0.88 +2.3 763,300 - +2.3 763,305 - +1.2 763,322 - +2.2 763,322 - +0.6 763,324 - +2.2 763,342 + +3.6 763,373 - +2.2 763,394 + +0.4 763,397 - +2.3 763,420 - +1.8 763,502 - +1.6 763,513 - +1.2 763,575 - +1.5 763,580 + +0.1 763,580 + +1.0 763,581 + +0.2 763,582 - +1.9 763,596 - +1.3 763,613 - +1.4 763,623 + +2.6 763,624 + +0.2 763,624 + -1.7 763,626 - +1.7 763,631 - +0.5 763,631 - -0.2 763,632 - CCNA_00706 0.10 +0.4 763,649 + CCNA_00706 0.14 -1.1 763,657 - CCNA_00706 0.16 -0.5 763,676 - CCNA_00706 0.21 +0.3 763,676 - CCNA_00706 0.21 +1.6 763,676 - CCNA_00706 0.21 +0.6 763,680 + CCNA_00706 0.22 -0.4 763,707 + CCNA_00706 0.28 -1.1 763,707 + CCNA_00706 0.28 -2.4 763,720 - CCNA_00706 0.31 -1.0 763,720 - CCNA_00706 0.31 +0.6 763,744 + CCNA_00706 0.37 +1.0 763,773 - CCNA_00706 0.44 -0.0 763,773 - CCNA_00706 0.44 +0.2 763,782 - CCNA_00706 0.46 -1.2 763,829 - CCNA_00706 0.58 +1.6 763,905 + CCNA_00706 0.76 +2.6 763,922 + CCNA_00706 0.80 -0.1 763,925 - CCNA_00706 0.81 -0.4 763,953 - CCNA_00706 0.88 +2.6 763,970 - +0.7 764,101 + -0.0 764,101 + +1.0 764,101 + -0.8 764,109 - +0.9 764,109 - +1.6 764,114 - +0.2 764,183 - +1.0 764,190 - +2.0 764,226 + CCNA_00707 0.11 +1.0 764,247 + CCNA_00707 0.13 -0.2 764,247 + CCNA_00707 0.13 -0.1 764,262 + CCNA_00707 0.15 -1.0 764,262 + CCNA_00707 0.15 -0.0 764,262 + CCNA_00707 0.15 +1.6 764,262 + CCNA_00707 0.15 -0.2 764,262 + CCNA_00707 0.15 -1.2 764,262 + CCNA_00707 0.15 -0.3 764,262 + CCNA_00707 0.15 -1.2 764,267 + CCNA_00707 0.15 -1.9 764,270 - CCNA_00707 0.15 +2.0 764,270 - CCNA_00707 0.15 +0.8 764,270 - CCNA_00707 0.15 +3.3 764,270 - CCNA_00707 0.15 +1.6 764,270 - CCNA_00707 0.15 +1.0 764,274 + +1.0 764,275 - CCNA_00707 0.16 +0.9 764,281 + CCNA_00707 0.16 +1.1 764,281 + CCNA_00707 0.16 +1.2 764,304 - CCNA_00707 0.19 +0.9
Or see this region's nucleotide sequence