Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00695 and CCNA_00696 are separated by 80 nucleotides CCNA_00696 and CCNA_00698 are separated by 513 nucleotides
CCNA_00695: CCNA_00695 - metal-dependent hydrolase, at 754,514 to 756,148
_00695
CCNA_00696: CCNA_00696 - O6-methylguanine-DNA methyltransferase, at 756,229 to 756,804
_00696
CCNA_00698: CCNA_00698 - hypothetical protein, at 757,318 to 757,815
_00698
Position (kb) 756
757 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 755.241 kb on - strand, within CCNA_00695 at 755.247 kb on + strand, within CCNA_00695 at 755.247 kb on + strand, within CCNA_00695 at 755.265 kb on - strand, within CCNA_00695 at 755.276 kb on + strand, within CCNA_00695 at 755.279 kb on - strand, within CCNA_00695 at 755.281 kb on + strand, within CCNA_00695 at 755.284 kb on - strand, within CCNA_00695 at 755.306 kb on - strand, within CCNA_00695 at 755.309 kb on + strand, within CCNA_00695 at 755.312 kb on - strand, within CCNA_00695 at 755.312 kb on - strand, within CCNA_00695 at 755.317 kb on - strand, within CCNA_00695 at 755.317 kb on - strand, within CCNA_00695 at 755.340 kb on + strand, within CCNA_00695 at 755.420 kb on + strand, within CCNA_00695 at 755.420 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.451 kb on + strand, within CCNA_00695 at 755.454 kb on - strand, within CCNA_00695 at 755.456 kb on + strand, within CCNA_00695 at 755.456 kb on + strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.459 kb on - strand, within CCNA_00695 at 755.464 kb on - strand, within CCNA_00695 at 755.466 kb on + strand, within CCNA_00695 at 755.469 kb on - strand, within CCNA_00695 at 755.477 kb on + strand, within CCNA_00695 at 755.479 kb on - strand, within CCNA_00695 at 755.486 kb on + strand, within CCNA_00695 at 755.528 kb on + strand, within CCNA_00695 at 755.537 kb on - strand, within CCNA_00695 at 755.553 kb on + strand, within CCNA_00695 at 755.556 kb on - strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.630 kb on + strand, within CCNA_00695 at 755.638 kb on - strand, within CCNA_00695 at 755.638 kb on - strand, within CCNA_00695 at 755.638 kb on - strand, within CCNA_00695 at 755.638 kb on - strand, within CCNA_00695 at 755.638 kb on - strand, within CCNA_00695 at 755.643 kb on - strand, within CCNA_00695 at 755.643 kb on - strand, within CCNA_00695 at 755.643 kb on - strand, within CCNA_00695 at 755.648 kb on - strand, within CCNA_00695 at 755.652 kb on + strand, within CCNA_00695 at 755.675 kb on + strand, within CCNA_00695 at 755.675 kb on + strand, within CCNA_00695 at 755.683 kb on - strand, within CCNA_00695 at 755.737 kb on + strand, within CCNA_00695 at 755.742 kb on + strand, within CCNA_00695 at 755.757 kb on + strand, within CCNA_00695 at 755.757 kb on + strand, within CCNA_00695 at 755.770 kb on - strand, within CCNA_00695 at 755.773 kb on + strand, within CCNA_00695 at 755.773 kb on + strand, within CCNA_00695 at 755.789 kb on - strand, within CCNA_00695 at 755.799 kb on + strand, within CCNA_00695 at 755.799 kb on + strand, within CCNA_00695 at 755.799 kb on + strand, within CCNA_00695 at 755.799 kb on + strand, within CCNA_00695 at 755.807 kb on - strand, within CCNA_00695 at 755.812 kb on - strand, within CCNA_00695 at 755.812 kb on - strand, within CCNA_00695 at 755.835 kb on + strand, within CCNA_00695 at 755.843 kb on - strand, within CCNA_00695 at 755.851 kb on + strand, within CCNA_00695 at 755.859 kb on - strand, within CCNA_00695 at 755.865 kb on - strand, within CCNA_00695 at 755.872 kb on + strand, within CCNA_00695 at 755.880 kb on - strand, within CCNA_00695 at 755.928 kb on + strand, within CCNA_00695 at 755.938 kb on - strand, within CCNA_00695 at 755.961 kb on + strand, within CCNA_00695 at 755.969 kb on - strand, within CCNA_00695 at 755.969 kb on - strand, within CCNA_00695 at 755.969 kb on - strand, within CCNA_00695 at 756.002 kb on - strand at 756.014 kb on + strand at 756.014 kb on + strand at 756.017 kb on - strand at 756.044 kb on + strand at 756.058 kb on + strand at 756.061 kb on - strand at 756.090 kb on + strand at 756.091 kb on + strand at 756.141 kb on - strand at 756.199 kb on - strand at 756.240 kb on + strand at 756.296 kb on - strand, within CCNA_00696 at 756.308 kb on + strand, within CCNA_00696 at 756.308 kb on + strand, within CCNA_00696 at 756.318 kb on + strand, within CCNA_00696 at 756.323 kb on - strand, within CCNA_00696 at 756.326 kb on - strand, within CCNA_00696 at 756.329 kb on + strand, within CCNA_00696 at 756.337 kb on - strand, within CCNA_00696 at 756.344 kb on + strand, within CCNA_00696 at 756.363 kb on + strand, within CCNA_00696 at 756.371 kb on + strand, within CCNA_00696 at 756.371 kb on - strand, within CCNA_00696 at 756.376 kb on + strand, within CCNA_00696 at 756.384 kb on - strand, within CCNA_00696 at 756.432 kb on + strand, within CCNA_00696 at 756.451 kb on + strand, within CCNA_00696 at 756.456 kb on + strand, within CCNA_00696 at 756.471 kb on + strand, within CCNA_00696 at 756.471 kb on + strand, within CCNA_00696 at 756.491 kb on + strand, within CCNA_00696 at 756.505 kb on - strand, within CCNA_00696 at 756.519 kb on - strand, within CCNA_00696 at 756.522 kb on + strand, within CCNA_00696 at 756.524 kb on - strand, within CCNA_00696 at 756.541 kb on + strand, within CCNA_00696 at 756.541 kb on + strand, within CCNA_00696 at 756.541 kb on + strand, within CCNA_00696 at 756.547 kb on + strand, within CCNA_00696 at 756.551 kb on + strand, within CCNA_00696 at 756.571 kb on - strand, within CCNA_00696 at 756.652 kb on - strand, within CCNA_00696 at 756.671 kb on + strand, within CCNA_00696 at 756.700 kb on + strand, within CCNA_00696 at 756.708 kb on - strand, within CCNA_00696 at 756.728 kb on - strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.741 kb on + strand, within CCNA_00696 at 756.749 kb on - strand at 756.749 kb on - strand at 756.749 kb on - strand at 756.766 kb on + strand at 756.770 kb on - strand at 756.774 kb on - strand at 756.806 kb on + strand at 756.813 kb on + strand at 756.813 kb on + strand at 756.821 kb on - strand at 756.821 kb on - strand at 756.828 kb on - strand at 756.828 kb on - strand at 756.833 kb on + strand at 756.841 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.872 kb on - strand at 756.874 kb on - strand at 757.023 kb on + strand at 757.023 kb on + strand at 757.025 kb on + strand at 757.052 kb on + strand at 757.052 kb on + strand at 757.060 kb on - strand at 757.071 kb on - strand at 757.091 kb on + strand at 757.092 kb on - strand at 757.148 kb on - strand at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.376 kb on + strand, within CCNA_00698 at 757.384 kb on - strand, within CCNA_00698 at 757.403 kb on + strand, within CCNA_00698 at 757.437 kb on - strand, within CCNA_00698 at 757.442 kb on + strand, within CCNA_00698 at 757.449 kb on + strand, within CCNA_00698 at 757.467 kb on - strand, within CCNA_00698 at 757.467 kb on - strand, within CCNA_00698 at 757.476 kb on + strand, within CCNA_00698 at 757.515 kb on - strand, within CCNA_00698 at 757.516 kb on + strand, within CCNA_00698 at 757.524 kb on - strand, within CCNA_00698 at 757.527 kb on + strand, within CCNA_00698 at 757.552 kb on - strand, within CCNA_00698 at 757.566 kb on - strand, within CCNA_00698 at 757.571 kb on + strand, within CCNA_00698 at 757.571 kb on + strand, within CCNA_00698 at 757.579 kb on - strand, within CCNA_00698 at 757.587 kb on - strand, within CCNA_00698 at 757.596 kb on + strand, within CCNA_00698 at 757.596 kb on + strand, within CCNA_00698 at 757.626 kb on + strand, within CCNA_00698 at 757.645 kb on + strand, within CCNA_00698 at 757.653 kb on - strand at 757.663 kb on + strand, within CCNA_00698 at 757.724 kb on + strand, within CCNA_00698 at 757.732 kb on - strand, within CCNA_00698 at 757.736 kb on + strand, within CCNA_00698 at 757.746 kb on + strand, within CCNA_00698 at 757.754 kb on - strand at 757.780 kb on + strand at 757.780 kb on + strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand at 757.788 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 755,241 - CCNA_00695 0.44 +1.8 755,247 + CCNA_00695 0.45 -0.6 755,247 + CCNA_00695 0.45 +1.2 755,265 - CCNA_00695 0.46 +1.0 755,276 + CCNA_00695 0.47 -1.4 755,279 - CCNA_00695 0.47 +0.4 755,281 + CCNA_00695 0.47 -0.0 755,284 - CCNA_00695 0.47 -0.3 755,306 - CCNA_00695 0.48 +2.0 755,309 + CCNA_00695 0.49 +2.5 755,312 - CCNA_00695 0.49 +1.0 755,312 - CCNA_00695 0.49 +0.2 755,317 - CCNA_00695 0.49 -2.2 755,317 - CCNA_00695 0.49 -0.0 755,340 + CCNA_00695 0.51 -0.4 755,420 + CCNA_00695 0.55 -0.8 755,420 + CCNA_00695 0.55 +0.5 755,451 + CCNA_00695 0.57 +0.3 755,451 + CCNA_00695 0.57 -1.3 755,451 + CCNA_00695 0.57 +0.9 755,451 + CCNA_00695 0.57 +0.0 755,451 + CCNA_00695 0.57 +0.4 755,451 + CCNA_00695 0.57 +0.2 755,451 + CCNA_00695 0.57 +3.5 755,451 + CCNA_00695 0.57 -1.7 755,451 + CCNA_00695 0.57 +2.5 755,451 + CCNA_00695 0.57 +0.7 755,451 + CCNA_00695 0.57 -0.2 755,454 - CCNA_00695 0.57 +0.5 755,456 + CCNA_00695 0.58 +0.6 755,456 + CCNA_00695 0.58 +1.0 755,459 - CCNA_00695 0.58 +0.4 755,459 - CCNA_00695 0.58 -1.6 755,459 - CCNA_00695 0.58 +1.3 755,459 - CCNA_00695 0.58 +0.2 755,459 - CCNA_00695 0.58 +0.2 755,459 - CCNA_00695 0.58 +1.0 755,459 - CCNA_00695 0.58 +0.2 755,459 - CCNA_00695 0.58 +0.2 755,459 - CCNA_00695 0.58 -0.5 755,459 - CCNA_00695 0.58 +0.2 755,464 - CCNA_00695 0.58 +1.0 755,466 + CCNA_00695 0.58 +0.1 755,469 - CCNA_00695 0.58 -1.6 755,477 + CCNA_00695 0.59 +0.1 755,479 - CCNA_00695 0.59 +1.3 755,486 + CCNA_00695 0.59 -0.3 755,528 + CCNA_00695 0.62 -1.3 755,537 - CCNA_00695 0.63 -0.3 755,553 + CCNA_00695 0.64 -1.2 755,556 - CCNA_00695 0.64 +3.5 755,630 + CCNA_00695 0.68 -0.5 755,630 + CCNA_00695 0.68 +0.5 755,630 + CCNA_00695 0.68 +0.1 755,630 + CCNA_00695 0.68 -0.0 755,630 + CCNA_00695 0.68 +2.3 755,630 + CCNA_00695 0.68 -0.9 755,630 + CCNA_00695 0.68 +1.0 755,630 + CCNA_00695 0.68 -0.8 755,638 - CCNA_00695 0.69 +1.1 755,638 - CCNA_00695 0.69 -0.7 755,638 - CCNA_00695 0.69 -2.4 755,638 - CCNA_00695 0.69 -0.6 755,638 - CCNA_00695 0.69 +0.1 755,643 - CCNA_00695 0.69 +0.6 755,643 - CCNA_00695 0.69 +0.7 755,643 - CCNA_00695 0.69 -0.0 755,648 - CCNA_00695 0.69 +0.0 755,652 + CCNA_00695 0.70 +2.5 755,675 + CCNA_00695 0.71 -0.6 755,675 + CCNA_00695 0.71 +1.3 755,683 - CCNA_00695 0.71 +1.1 755,737 + CCNA_00695 0.75 +0.7 755,742 + CCNA_00695 0.75 -0.8 755,757 + CCNA_00695 0.76 +1.0 755,757 + CCNA_00695 0.76 -1.8 755,770 - CCNA_00695 0.77 +1.9 755,773 + CCNA_00695 0.77 -0.3 755,773 + CCNA_00695 0.77 -0.3 755,789 - CCNA_00695 0.78 +0.7 755,799 + CCNA_00695 0.79 -0.6 755,799 + CCNA_00695 0.79 +0.2 755,799 + CCNA_00695 0.79 +1.2 755,799 + CCNA_00695 0.79 +1.0 755,807 - CCNA_00695 0.79 +1.4 755,812 - CCNA_00695 0.79 -0.9 755,812 - CCNA_00695 0.79 +1.0 755,835 + CCNA_00695 0.81 -0.0 755,843 - CCNA_00695 0.81 +0.5 755,851 + CCNA_00695 0.82 +1.5 755,859 - CCNA_00695 0.82 +0.8 755,865 - CCNA_00695 0.83 -1.5 755,872 + CCNA_00695 0.83 -0.3 755,880 - CCNA_00695 0.84 +0.2 755,928 + CCNA_00695 0.86 +0.5 755,938 - CCNA_00695 0.87 -0.9 755,961 + CCNA_00695 0.89 +1.8 755,969 - CCNA_00695 0.89 -0.0 755,969 - CCNA_00695 0.89 +1.5 755,969 - CCNA_00695 0.89 +1.5 756,002 - +0.8 756,014 + +1.5 756,014 + +0.1 756,017 - +0.2 756,044 + -1.0 756,058 + +0.7 756,061 - -0.9 756,090 + -0.5 756,091 + +0.2 756,141 - +1.5 756,199 - -0.6 756,240 + +0.5 756,296 - CCNA_00696 0.12 +1.0 756,308 + CCNA_00696 0.14 -0.0 756,308 + CCNA_00696 0.14 -1.3 756,318 + CCNA_00696 0.15 +1.3 756,323 - CCNA_00696 0.16 +0.2 756,326 - CCNA_00696 0.17 -0.9 756,329 + CCNA_00696 0.17 +0.0 756,337 - CCNA_00696 0.19 +1.5 756,344 + CCNA_00696 0.20 +0.2 756,363 + CCNA_00696 0.23 +0.8 756,371 + CCNA_00696 0.25 +1.8 756,371 - CCNA_00696 0.25 -0.6 756,376 + CCNA_00696 0.26 +1.4 756,384 - CCNA_00696 0.27 -1.9 756,432 + CCNA_00696 0.35 +0.7 756,451 + CCNA_00696 0.39 +0.2 756,456 + CCNA_00696 0.39 +1.1 756,471 + CCNA_00696 0.42 -0.7 756,471 + CCNA_00696 0.42 +0.8 756,491 + CCNA_00696 0.45 +1.1 756,505 - CCNA_00696 0.48 +0.5 756,519 - CCNA_00696 0.50 +1.0 756,522 + CCNA_00696 0.51 -0.9 756,524 - CCNA_00696 0.51 +1.3 756,541 + CCNA_00696 0.54 +0.7 756,541 + CCNA_00696 0.54 -1.1 756,541 + CCNA_00696 0.54 +0.6 756,547 + CCNA_00696 0.55 +0.2 756,551 + CCNA_00696 0.56 +0.7 756,571 - CCNA_00696 0.59 +1.0 756,652 - CCNA_00696 0.73 +0.9 756,671 + CCNA_00696 0.77 +0.8 756,700 + CCNA_00696 0.82 +0.5 756,708 - CCNA_00696 0.83 -1.0 756,728 - CCNA_00696 0.87 +1.5 756,741 + CCNA_00696 0.89 +0.3 756,741 + CCNA_00696 0.89 -1.0 756,741 + CCNA_00696 0.89 +1.6 756,741 + CCNA_00696 0.89 -1.3 756,749 - +0.9 756,749 - +0.4 756,749 - +0.2 756,766 + +2.8 756,770 - -1.0 756,774 - +1.0 756,806 + -0.0 756,813 + +1.0 756,813 + +2.1 756,821 - -1.5 756,821 - +1.5 756,828 - -1.9 756,828 - +2.5 756,833 + +0.6 756,841 - +2.5 756,872 - +2.0 756,872 - +3.5 756,872 - +1.2 756,872 - +2.3 756,872 - +0.5 756,874 - +1.5 757,023 + -1.1 757,023 + -0.3 757,025 + -0.5 757,052 + +1.5 757,052 + +1.7 757,060 - +1.0 757,071 - +0.9 757,091 + -1.9 757,092 - +0.9 757,148 - +1.4 757,376 + CCNA_00698 0.12 +0.4 757,376 + CCNA_00698 0.12 -2.4 757,376 + CCNA_00698 0.12 -1.3 757,376 + CCNA_00698 0.12 +0.5 757,384 - CCNA_00698 0.13 +0.0 757,403 + CCNA_00698 0.17 +0.6 757,437 - CCNA_00698 0.24 +0.5 757,442 + CCNA_00698 0.25 -1.9 757,449 + CCNA_00698 0.26 +1.4 757,467 - CCNA_00698 0.30 -0.6 757,467 - CCNA_00698 0.30 -0.8 757,476 + CCNA_00698 0.32 +1.0 757,515 - CCNA_00698 0.40 -1.4 757,516 + CCNA_00698 0.40 -2.4 757,524 - CCNA_00698 0.41 -0.7 757,527 + CCNA_00698 0.42 -0.5 757,552 - CCNA_00698 0.47 -0.5 757,566 - CCNA_00698 0.50 -0.9 757,571 + CCNA_00698 0.51 +1.0 757,571 + CCNA_00698 0.51 -0.7 757,579 - CCNA_00698 0.52 +3.9 757,587 - CCNA_00698 0.54 -0.5 757,596 + CCNA_00698 0.56 +2.5 757,596 + CCNA_00698 0.56 -1.3 757,626 + CCNA_00698 0.62 +2.5 757,645 + CCNA_00698 0.66 -0.8 757,653 - +2.5 757,663 + CCNA_00698 0.69 -1.5 757,724 + CCNA_00698 0.82 -1.2 757,732 - CCNA_00698 0.83 -0.6 757,736 + CCNA_00698 0.84 +2.5 757,746 + CCNA_00698 0.86 +1.0 757,754 - +1.0 757,780 + -0.6 757,780 + +0.2 757,788 - +3.1 757,788 - +0.2 757,788 - -0.8 757,788 - +1.2 757,788 - -1.4 757,788 - -0.3 757,788 - +0.4 757,788 - -0.0 757,788 - +3.9
Or see this region's nucleotide sequence