Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CCNA_00536 and CCNA_00537 are separated by 113 nucleotides CCNA_00537 and CCNA_00538 are separated by 218 nucleotides
CCNA_00536: CCNA_00536 - DNA-directed RNA polymerase beta chain, at 547,831 to 551,901
_00536
CCNA_00537: CCNA_00537 - DNA-directed RNA polymerase beta, at 552,015 to 556,205
_00537
CCNA_00538: CCNA_00538 - methyl-accepting chemotaxis protein, at 556,424 to 558,220
_00538
Position (kb) 552
553
554
555
556
557 Strain fitness (log2 ratio) -1
0
1
2
3 at 551.900 kb on + strand at 551.900 kb on + strand at 551.937 kb on + strand at 556.087 kb on + strand at 556.109 kb on + strand at 556.142 kb on - strand at 556.226 kb on - strand at 556.232 kb on + strand at 556.289 kb on + strand at 556.297 kb on - strand at 556.418 kb on + strand at 556.440 kb on + strand at 556.448 kb on - strand at 556.507 kb on - strand at 556.509 kb on + strand at 556.612 kb on + strand, within CCNA_00538 at 556.612 kb on + strand, within CCNA_00538 at 556.615 kb on - strand, within CCNA_00538 at 556.624 kb on + strand, within CCNA_00538 at 556.689 kb on + strand, within CCNA_00538 at 556.689 kb on + strand, within CCNA_00538 at 556.689 kb on + strand, within CCNA_00538 at 556.697 kb on - strand, within CCNA_00538 at 556.721 kb on - strand, within CCNA_00538 at 556.738 kb on + strand, within CCNA_00538 at 556.738 kb on + strand, within CCNA_00538 at 556.780 kb on + strand, within CCNA_00538 at 556.788 kb on - strand, within CCNA_00538 at 556.804 kb on + strand, within CCNA_00538 at 556.804 kb on + strand, within CCNA_00538 at 556.812 kb on - strand, within CCNA_00538 at 556.817 kb on - strand at 556.838 kb on + strand, within CCNA_00538 at 556.838 kb on + strand, within CCNA_00538 at 556.838 kb on + strand, within CCNA_00538 at 556.838 kb on + strand, within CCNA_00538 at 556.838 kb on + strand, within CCNA_00538 at 556.838 kb on + strand, within CCNA_00538 at 556.840 kb on + strand, within CCNA_00538 at 556.846 kb on - strand, within CCNA_00538 at 556.896 kb on + strand, within CCNA_00538 at 556.925 kb on + strand, within CCNA_00538 at 556.933 kb on + strand at 556.935 kb on - strand, within CCNA_00538 at 556.941 kb on - strand, within CCNA_00538 at 556.941 kb on - strand, within CCNA_00538 at 556.980 kb on + strand, within CCNA_00538 at 556.985 kb on + strand, within CCNA_00538 at 556.988 kb on - strand, within CCNA_00538 at 556.990 kb on + strand, within CCNA_00538 at 557.002 kb on + strand, within CCNA_00538 at 557.028 kb on + strand, within CCNA_00538 at 557.062 kb on + strand, within CCNA_00538 at 557.070 kb on - strand, within CCNA_00538 at 557.124 kb on + strand, within CCNA_00538 at 557.154 kb on - strand, within CCNA_00538 at 557.173 kb on + strand, within CCNA_00538 at 557.181 kb on - strand, within CCNA_00538 at 557.184 kb on + strand, within CCNA_00538 at 557.194 kb on - strand, within CCNA_00538 at 557.194 kb on - strand, within CCNA_00538
Per-strain Table
Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol% remove 551,900 + +3.1 551,900 + +3.4 551,937 + +2.5 556,087 + +2.0 556,109 + +3.0 556,142 - +1.3 556,226 - +1.3 556,232 + +3.0 556,289 + +3.0 556,297 - -0.8 556,418 + +0.2 556,440 + +1.3 556,448 - +0.0 556,507 - -1.2 556,509 + +0.7 556,612 + CCNA_00538 0.10 +0.3 556,612 + CCNA_00538 0.10 +0.3 556,615 - CCNA_00538 0.11 -1.5 556,624 + CCNA_00538 0.11 +0.4 556,689 + CCNA_00538 0.15 +0.7 556,689 + CCNA_00538 0.15 +0.4 556,689 + CCNA_00538 0.15 +1.4 556,697 - CCNA_00538 0.15 -0.1 556,721 - CCNA_00538 0.17 +0.8 556,738 + CCNA_00538 0.17 +1.2 556,738 + CCNA_00538 0.17 +0.0 556,780 + CCNA_00538 0.20 +1.9 556,788 - CCNA_00538 0.20 +1.5 556,804 + CCNA_00538 0.21 +0.2 556,804 + CCNA_00538 0.21 +0.6 556,812 - CCNA_00538 0.22 -0.5 556,817 - +3.3 556,838 + CCNA_00538 0.23 -0.4 556,838 + CCNA_00538 0.23 +1.6 556,838 + CCNA_00538 0.23 +0.3 556,838 + CCNA_00538 0.23 +0.2 556,838 + CCNA_00538 0.23 -0.5 556,838 + CCNA_00538 0.23 +0.8 556,840 + CCNA_00538 0.23 -0.3 556,846 - CCNA_00538 0.23 +1.3 556,896 + CCNA_00538 0.26 +0.6 556,925 + CCNA_00538 0.28 +1.1 556,933 + +1.3 556,935 - CCNA_00538 0.28 +2.3 556,941 - CCNA_00538 0.29 +0.1 556,941 - CCNA_00538 0.29 -0.7 556,980 + CCNA_00538 0.31 +2.2 556,985 + CCNA_00538 0.31 +1.1 556,988 - CCNA_00538 0.31 +0.4 556,990 + CCNA_00538 0.31 +0.9 557,002 + CCNA_00538 0.32 +0.5 557,028 + CCNA_00538 0.34 +0.7 557,062 + CCNA_00538 0.36 +0.8 557,070 - CCNA_00538 0.36 +1.0 557,124 + CCNA_00538 0.39 +0.6 557,154 - CCNA_00538 0.41 -1.0 557,173 + CCNA_00538 0.42 +0.3 557,181 - CCNA_00538 0.42 -0.1 557,184 + CCNA_00538 0.42 +1.0 557,194 - CCNA_00538 0.43 -1.4 557,194 - CCNA_00538 0.43 +0.0
Or see this region's nucleotide sequence