Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00438

Experiment: PYE with Dimethyl Sulfoxide 7.5 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00437 and CCNA_00438 are separated by 211 nucleotidesCCNA_00438 and CCNA_00439 are separated by 296 nucleotides CCNA_00437: CCNA_00437 - methyl-accepting chemotaxis protein, at 443,064 to 444,677 _00437 CCNA_00438: CCNA_00438 - hypothetical protein, at 444,889 to 445,200 _00438 CCNA_00439: CCNA_00439 - methyl-accepting chemotaxis protein, at 445,497 to 447,518 _00439 Position (kb) 444 445 446Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 443.910 kb on - strand, within CCNA_00437at 443.924 kb on - strand, within CCNA_00437at 443.966 kb on + strand, within CCNA_00437at 443.980 kb on - strand, within CCNA_00437at 443.980 kb on - strand, within CCNA_00437at 444.031 kb on - strand, within CCNA_00437at 444.037 kb on - strand, within CCNA_00437at 444.069 kb on - strand, within CCNA_00437at 444.095 kb on - strand, within CCNA_00437at 444.097 kb on + strand, within CCNA_00437at 444.119 kb on + strand, within CCNA_00437at 444.127 kb on - strand, within CCNA_00437at 444.127 kb on - strand, within CCNA_00437at 444.138 kb on + strand, within CCNA_00437at 444.143 kb on + strand, within CCNA_00437at 444.168 kb on + strand, within CCNA_00437at 444.169 kb on + strand, within CCNA_00437at 444.218 kb on + strand, within CCNA_00437at 444.218 kb on - strand, within CCNA_00437at 444.226 kb on - strand, within CCNA_00437at 444.230 kb on + strand, within CCNA_00437at 444.238 kb on - strand, within CCNA_00437at 444.238 kb on - strand, within CCNA_00437at 444.238 kb on - strand, within CCNA_00437at 444.251 kb on + strand, within CCNA_00437at 444.264 kb on - strand, within CCNA_00437at 444.296 kb on + strand, within CCNA_00437at 444.368 kb on - strand, within CCNA_00437at 444.376 kb on - strand, within CCNA_00437at 444.376 kb on - strand, within CCNA_00437at 444.380 kb on + strand, within CCNA_00437at 444.383 kb on - strand, within CCNA_00437at 444.387 kb on + strand, within CCNA_00437at 444.388 kb on - strand, within CCNA_00437at 444.388 kb on - strand, within CCNA_00437at 444.411 kb on + strand, within CCNA_00437at 444.419 kb on - strand, within CCNA_00437at 444.420 kb on + strand, within CCNA_00437at 444.420 kb on + strand, within CCNA_00437at 444.420 kb on + strand, within CCNA_00437at 444.428 kb on - strand, within CCNA_00437at 444.494 kb on + strand, within CCNA_00437at 444.503 kb on + strand, within CCNA_00437at 444.511 kb on - strand, within CCNA_00437at 444.513 kb on + strand, within CCNA_00437at 444.520 kb on + strandat 444.530 kb on - strandat 444.541 kb on - strandat 444.686 kb on + strandat 444.694 kb on - strandat 444.708 kb on - strandat 444.708 kb on - strandat 444.710 kb on - strandat 444.715 kb on + strandat 444.723 kb on - strandat 444.723 kb on - strandat 444.738 kb on + strandat 444.758 kb on + strandat 444.758 kb on + strandat 444.758 kb on + strandat 444.766 kb on + strandat 444.766 kb on - strandat 444.827 kb on - strandat 444.827 kb on - strandat 444.832 kb on - strandat 444.848 kb on - strandat 444.857 kb on - strandat 444.858 kb on - strandat 444.985 kb on + strand, within CCNA_00438at 445.006 kb on + strand, within CCNA_00438at 445.006 kb on + strand, within CCNA_00438at 445.013 kb on + strand, within CCNA_00438at 445.014 kb on - strand, within CCNA_00438at 445.021 kb on - strand, within CCNA_00438at 445.051 kb on - strand, within CCNA_00438at 445.055 kb on + strand, within CCNA_00438at 445.055 kb on + strand, within CCNA_00438at 445.063 kb on - strand, within CCNA_00438at 445.063 kb on - strand, within CCNA_00438at 445.083 kb on - strand, within CCNA_00438at 445.092 kb on + strand, within CCNA_00438at 445.108 kb on - strand, within CCNA_00438at 445.116 kb on - strand, within CCNA_00438at 445.141 kb on + strand, within CCNA_00438at 445.202 kb on - strandat 445.202 kb on - strandat 445.359 kb on - strandat 445.376 kb on - strandat 445.378 kb on + strandat 445.491 kb on + strandat 445.499 kb on - strandat 445.499 kb on - strandat 445.519 kb on + strandat 445.526 kb on + strandat 445.526 kb on + strandat 445.526 kb on + strandat 445.526 kb on + strandat 445.526 kb on + strandat 445.534 kb on - strandat 445.534 kb on - strandat 445.534 kb on - strandat 445.534 kb on - strandat 445.534 kb on - strandat 445.567 kb on + strandat 445.575 kb on - strandat 445.599 kb on - strandat 445.611 kb on + strandat 445.650 kb on + strandat 445.684 kb on - strandat 445.691 kb on - strandat 445.774 kb on + strand, within CCNA_00439at 445.782 kb on - strand, within CCNA_00439at 445.782 kb on - strand, within CCNA_00439at 445.790 kb on + strand, within CCNA_00439at 445.832 kb on + strand, within CCNA_00439at 445.840 kb on - strand, within CCNA_00439at 445.883 kb on + strand, within CCNA_00439at 445.906 kb on + strand, within CCNA_00439at 445.906 kb on + strand, within CCNA_00439at 445.932 kb on - strand, within CCNA_00439at 445.952 kb on - strand, within CCNA_00439at 445.955 kb on + strand, within CCNA_00439at 445.962 kb on + strand, within CCNA_00439at 445.975 kb on - strand, within CCNA_00439at 445.999 kb on + strand, within CCNA_00439at 445.999 kb on + strand, within CCNA_00439at 446.024 kb on - strand, within CCNA_00439at 446.045 kb on + strand, within CCNA_00439at 446.051 kb on + strand, within CCNA_00439at 446.070 kb on - strand, within CCNA_00439at 446.070 kb on - strand, within CCNA_00439at 446.090 kb on + strand, within CCNA_00439at 446.096 kb on + strand, within CCNA_00439at 446.103 kb on + strand, within CCNA_00439at 446.108 kb on + strand, within CCNA_00439at 446.108 kb on + strand, within CCNA_00439at 446.121 kb on - strand, within CCNA_00439at 446.147 kb on + strand, within CCNA_00439at 446.162 kb on + strand, within CCNA_00439at 446.169 kb on + strand, within CCNA_00439

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE with Dimethyl Sulfoxide 7.5 vol%
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443,910 - CCNA_00437 0.52 +0.7
443,924 - CCNA_00437 0.53 +0.4
443,966 + CCNA_00437 0.56 -1.8
443,980 - CCNA_00437 0.57 -1.0
443,980 - CCNA_00437 0.57 -2.9
444,031 - CCNA_00437 0.60 +1.4
444,037 - CCNA_00437 0.60 -1.4
444,069 - CCNA_00437 0.62 -0.6
444,095 - CCNA_00437 0.64 +1.0
444,097 + CCNA_00437 0.64 -0.4
444,119 + CCNA_00437 0.65 +0.2
444,127 - CCNA_00437 0.66 +0.2
444,127 - CCNA_00437 0.66 -0.3
444,138 + CCNA_00437 0.67 -1.0
444,143 + CCNA_00437 0.67 -0.4
444,168 + CCNA_00437 0.68 -0.6
444,169 + CCNA_00437 0.68 -0.7
444,218 + CCNA_00437 0.71 +1.5
444,218 - CCNA_00437 0.71 +0.4
444,226 - CCNA_00437 0.72 -2.1
444,230 + CCNA_00437 0.72 -0.5
444,238 - CCNA_00437 0.73 -0.6
444,238 - CCNA_00437 0.73 -1.0
444,238 - CCNA_00437 0.73 +0.4
444,251 + CCNA_00437 0.74 -1.3
444,264 - CCNA_00437 0.74 +1.3
444,296 + CCNA_00437 0.76 -0.1
444,368 - CCNA_00437 0.81 +1.0
444,376 - CCNA_00437 0.81 -1.0
444,376 - CCNA_00437 0.81 -1.0
444,380 + CCNA_00437 0.82 -1.0
444,383 - CCNA_00437 0.82 +1.5
444,387 + CCNA_00437 0.82 +0.4
444,388 - CCNA_00437 0.82 +2.2
444,388 - CCNA_00437 0.82 +2.7
444,411 + CCNA_00437 0.83 -0.8
444,419 - CCNA_00437 0.84 -0.3
444,420 + CCNA_00437 0.84 -0.8
444,420 + CCNA_00437 0.84 +1.0
444,420 + CCNA_00437 0.84 -2.2
444,428 - CCNA_00437 0.85 +2.0
444,494 + CCNA_00437 0.89 -1.3
444,503 + CCNA_00437 0.89 -0.6
444,511 - CCNA_00437 0.90 -0.9
444,513 + CCNA_00437 0.90 -1.4
444,520 + -1.9
444,530 - -0.3
444,541 - -0.6
444,686 + -1.1
444,694 - -0.8
444,708 - -2.0
444,708 - +0.7
444,710 - -0.7
444,715 + -0.7
444,723 - -1.3
444,723 - -0.6
444,738 + +1.1
444,758 + -0.0
444,758 + -1.3
444,758 + +0.7
444,766 + +3.0
444,766 - -0.3
444,827 - -0.6
444,827 - -1.0
444,832 - -0.0
444,848 - -0.1
444,857 - +1.5
444,858 - +0.7
444,985 + CCNA_00438 0.31 -0.6
445,006 + CCNA_00438 0.38 +2.0
445,006 + CCNA_00438 0.38 +1.0
445,013 + CCNA_00438 0.40 -0.0
445,014 - CCNA_00438 0.40 +2.4
445,021 - CCNA_00438 0.42 +2.4
445,051 - CCNA_00438 0.52 +2.2
445,055 + CCNA_00438 0.53 +1.0
445,055 + CCNA_00438 0.53 -0.8
445,063 - CCNA_00438 0.56 +1.5
445,063 - CCNA_00438 0.56 +2.7
445,083 - CCNA_00438 0.62 +1.8
445,092 + CCNA_00438 0.65 +1.0
445,108 - CCNA_00438 0.70 +2.6
445,116 - CCNA_00438 0.73 +1.7
445,141 + CCNA_00438 0.81 -0.8
445,202 - +0.8
445,202 - +0.7
445,359 - -1.0
445,376 - -1.3
445,378 + -2.1
445,491 + +0.2
445,499 - +0.4
445,499 - -1.9
445,519 + +0.2
445,526 + +1.2
445,526 + +0.7
445,526 + +1.9
445,526 + +1.6
445,526 + +1.0
445,534 - -0.8
445,534 - -1.8
445,534 - -0.8
445,534 - -0.5
445,534 - -0.6
445,567 + +1.1
445,575 - -1.8
445,599 - -1.5
445,611 + +0.2
445,650 + +1.7
445,684 - -1.3
445,691 - -0.0
445,774 + CCNA_00439 0.14 +2.0
445,782 - CCNA_00439 0.14 -0.1
445,782 - CCNA_00439 0.14 -1.3
445,790 + CCNA_00439 0.14 +1.2
445,832 + CCNA_00439 0.17 +2.4
445,840 - CCNA_00439 0.17 -1.5
445,883 + CCNA_00439 0.19 +2.1
445,906 + CCNA_00439 0.20 +1.2
445,906 + CCNA_00439 0.20 -0.0
445,932 - CCNA_00439 0.22 -1.2
445,952 - CCNA_00439 0.23 +1.0
445,955 + CCNA_00439 0.23 +1.9
445,962 + CCNA_00439 0.23 +2.0
445,975 - CCNA_00439 0.24 +1.0
445,999 + CCNA_00439 0.25 +1.7
445,999 + CCNA_00439 0.25 +0.5
446,024 - CCNA_00439 0.26 +0.8
446,045 + CCNA_00439 0.27 +2.5
446,051 + CCNA_00439 0.27 +1.4
446,070 - CCNA_00439 0.28 -1.0
446,070 - CCNA_00439 0.28 -2.1
446,090 + CCNA_00439 0.29 +3.4
446,096 + CCNA_00439 0.30 +2.7
446,103 + CCNA_00439 0.30 +1.1
446,108 + CCNA_00439 0.30 +1.6
446,108 + CCNA_00439 0.30 +1.9
446,121 - CCNA_00439 0.31 +0.8
446,147 + CCNA_00439 0.32 +1.4
446,162 + CCNA_00439 0.33 +2.4
446,169 + CCNA_00439 0.33 +2.3

Or see this region's nucleotide sequence