Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30090 and AO356_30095 are separated by 239 nucleotides AO356_30095 and AO356_30100 overlap by 4 nucleotides AO356_30100 and AO356_30105 overlap by 19 nucleotides
AO356_30090: AO356_30090 - XRE family transcriptional regulator, at 7,023,086 to 7,023,685
_30090
AO356_30095: AO356_30095 - formyltetrahydrofolate deformylase, at 7,023,925 to 7,024,791
_30095
AO356_30100: AO356_30100 - bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/5,10-methylene-tetrahydrofolate cyclohydrolase, at 7,024,788 to 7,025,693
_30100
AO356_30105: AO356_30105 - sarcosine oxidase subunit beta, at 7,025,675 to 7,026,916
_30105
Position (kb)
7023
7024
7025 Strain fitness (log2 ratio)
-1
0
1
2 at 7022.959 kb on + strand at 7022.959 kb on + strand at 7022.959 kb on + strand at 7022.960 kb on - strand at 7022.960 kb on - strand at 7022.961 kb on + strand at 7022.961 kb on + strand at 7022.961 kb on + strand at 7022.962 kb on - strand at 7022.962 kb on - strand at 7022.963 kb on + strand at 7022.964 kb on - strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.085 kb on + strand at 7023.086 kb on - strand at 7023.086 kb on - strand at 7023.086 kb on - strand at 7023.125 kb on + strand at 7023.126 kb on - strand at 7023.175 kb on - strand, within AO356_30090 at 7023.397 kb on + strand, within AO356_30090 at 7023.397 kb on + strand, within AO356_30090 at 7023.397 kb on + strand, within AO356_30090 at 7023.398 kb on - strand, within AO356_30090 at 7023.398 kb on - strand, within AO356_30090 at 7023.398 kb on - strand, within AO356_30090 at 7023.401 kb on + strand, within AO356_30090 at 7023.401 kb on + strand, within AO356_30090 at 7023.401 kb on + strand, within AO356_30090 at 7023.401 kb on + strand, within AO356_30090 at 7023.402 kb on - strand, within AO356_30090 at 7023.402 kb on - strand, within AO356_30090 at 7023.402 kb on - strand, within AO356_30090 at 7023.449 kb on + strand, within AO356_30090 at 7023.449 kb on + strand, within AO356_30090 at 7023.449 kb on + strand, within AO356_30090 at 7023.449 kb on + strand, within AO356_30090 at 7023.450 kb on - strand, within AO356_30090 at 7023.450 kb on - strand, within AO356_30090 at 7023.450 kb on - strand, within AO356_30090 at 7023.542 kb on + strand, within AO356_30090 at 7023.683 kb on + strand at 7023.684 kb on - strand at 7023.802 kb on - strand at 7023.803 kb on + strand at 7023.804 kb on - strand at 7023.804 kb on - strand at 7023.804 kb on - strand at 7023.887 kb on + strand at 7024.004 kb on - strand at 7024.024 kb on + strand, within AO356_30095 at 7024.025 kb on - strand, within AO356_30095 at 7024.355 kb on - strand, within AO356_30095 at 7024.451 kb on - strand, within AO356_30095 at 7024.451 kb on - strand, within AO356_30095 at 7024.451 kb on - strand, within AO356_30095 at 7024.601 kb on - strand, within AO356_30095 at 7024.601 kb on - strand, within AO356_30095 at 7024.666 kb on + strand, within AO356_30095 at 7024.667 kb on - strand, within AO356_30095 at 7024.667 kb on - strand, within AO356_30095 at 7024.667 kb on - strand, within AO356_30095 at 7024.667 kb on - strand, within AO356_30095 at 7024.935 kb on + strand at 7024.935 kb on + strand, within AO356_30100 at 7024.935 kb on + strand, within AO356_30100 at 7024.935 kb on + strand, within AO356_30100 at 7024.935 kb on + strand, within AO356_30100 at 7024.936 kb on - strand, within AO356_30100 at 7025.147 kb on - strand, within AO356_30100 at 7025.147 kb on - strand, within AO356_30100 at 7025.229 kb on + strand, within AO356_30100 at 7025.258 kb on - strand, within AO356_30100 at 7025.674 kb on + strand at 7025.688 kb on + strand at 7025.762 kb on + strand at 7025.763 kb on - strand at 7025.763 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand at 7025.770 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 7,022,959 + -0.1 7,022,959 + +0.0 7,022,959 + +0.2 7,022,960 - -0.5 7,022,960 - -0.4 7,022,961 + -0.6 7,022,961 + +1.0 7,022,961 + -0.5 7,022,962 - +0.2 7,022,962 - +0.1 7,022,963 + -0.6 7,022,964 - -0.4 7,023,085 + -0.8 7,023,085 + -0.2 7,023,085 + +0.2 7,023,085 + +0.3 7,023,085 + -0.4 7,023,085 + -0.4 7,023,085 + -0.7 7,023,085 + -1.5 7,023,086 - +0.5 7,023,086 - -0.2 7,023,086 - -0.0 7,023,125 + +0.9 7,023,126 - -0.9 7,023,175 - AO356_30090 0.15 -0.2 7,023,397 + AO356_30090 0.52 -0.5 7,023,397 + AO356_30090 0.52 -0.1 7,023,397 + AO356_30090 0.52 +0.0 7,023,398 - AO356_30090 0.52 +1.9 7,023,398 - AO356_30090 0.52 -0.3 7,023,398 - AO356_30090 0.52 -0.2 7,023,401 + AO356_30090 0.53 -0.5 7,023,401 + AO356_30090 0.53 -0.2 7,023,401 + AO356_30090 0.53 +0.4 7,023,401 + AO356_30090 0.53 -1.0 7,023,402 - AO356_30090 0.53 +1.7 7,023,402 - AO356_30090 0.53 +0.6 7,023,402 - AO356_30090 0.53 -0.9 7,023,449 + AO356_30090 0.60 -0.2 7,023,449 + AO356_30090 0.60 +0.7 7,023,449 + AO356_30090 0.60 +0.1 7,023,449 + AO356_30090 0.60 -0.1 7,023,450 - AO356_30090 0.61 -0.2 7,023,450 - AO356_30090 0.61 -0.8 7,023,450 - AO356_30090 0.61 -0.4 7,023,542 + AO356_30090 0.76 -0.7 7,023,683 + +0.5 7,023,684 - +1.1 7,023,802 - -0.4 7,023,803 + +1.1 7,023,804 - -1.2 7,023,804 - -0.4 7,023,804 - -1.2 7,023,887 + +0.1 7,024,004 - +0.0 7,024,024 + AO356_30095 0.11 -0.2 7,024,025 - AO356_30095 0.12 -0.9 7,024,355 - AO356_30095 0.50 -0.5 7,024,451 - AO356_30095 0.61 +0.1 7,024,451 - AO356_30095 0.61 -0.3 7,024,451 - AO356_30095 0.61 -0.2 7,024,601 - AO356_30095 0.78 -0.6 7,024,601 - AO356_30095 0.78 +0.7 7,024,666 + AO356_30095 0.85 -0.7 7,024,667 - AO356_30095 0.86 +0.0 7,024,667 - AO356_30095 0.86 +0.1 7,024,667 - AO356_30095 0.86 -0.9 7,024,667 - AO356_30095 0.86 +0.9 7,024,935 + +0.9 7,024,935 + AO356_30100 0.16 -1.0 7,024,935 + AO356_30100 0.16 -0.0 7,024,935 + AO356_30100 0.16 -0.1 7,024,935 + AO356_30100 0.16 +0.1 7,024,936 - AO356_30100 0.16 -0.2 7,025,147 - AO356_30100 0.40 -1.3 7,025,147 - AO356_30100 0.40 +0.4 7,025,229 + AO356_30100 0.49 +0.3 7,025,258 - AO356_30100 0.52 -0.4 7,025,674 + -0.2 7,025,688 + +0.6 7,025,762 + +0.7 7,025,763 - -1.0 7,025,763 - +0.8 7,025,770 - +0.3 7,025,770 - +0.2 7,025,770 - +0.5 7,025,770 - -0.3 7,025,770 - +0.7
Or see this region's nucleotide sequence