Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_30070 and AO356_30075 are separated by 20 nucleotides AO356_30075 and AO356_30080 are separated by 11 nucleotides AO356_30080 and AO356_30085 are separated by 72 nucleotides
AO356_30070: AO356_30070 - glutamate synthase, at 7,018,433 to 7,019,776
_30070
AO356_30075: AO356_30075 - protein glxC, at 7,019,797 to 7,020,480
_30075
AO356_30080: AO356_30080 - amidophosphoribosyltransferase, at 7,020,492 to 7,021,397
_30080
AO356_30085: AO356_30085 - glutamine synthetase, at 7,021,470 to 7,022,804
_30085
Position (kb) 7020
7021
7022 Strain fitness (log2 ratio) -2
-1
0
1 at 7019.668 kb on - strand at 7019.668 kb on - strand at 7019.668 kb on - strand at 7019.776 kb on + strand at 7019.776 kb on + strand at 7019.777 kb on - strand at 7019.777 kb on - strand at 7019.832 kb on - strand at 7019.832 kb on - strand at 7019.832 kb on - strand at 7019.874 kb on + strand, within AO356_30075 at 7019.874 kb on + strand, within AO356_30075 at 7019.984 kb on + strand, within AO356_30075 at 7019.984 kb on + strand, within AO356_30075 at 7019.984 kb on + strand, within AO356_30075 at 7019.984 kb on + strand, within AO356_30075 at 7019.984 kb on + strand, within AO356_30075 at 7019.985 kb on - strand, within AO356_30075 at 7020.302 kb on + strand, within AO356_30075 at 7020.303 kb on - strand, within AO356_30075 at 7020.472 kb on - strand at 7020.480 kb on + strand at 7020.481 kb on - strand at 7020.481 kb on - strand at 7020.493 kb on + strand at 7020.517 kb on + strand at 7020.517 kb on + strand at 7020.517 kb on + strand at 7020.517 kb on + strand at 7020.517 kb on + strand at 7020.518 kb on - strand at 7020.518 kb on - strand at 7020.518 kb on - strand at 7020.518 kb on - strand at 7020.521 kb on + strand at 7020.522 kb on - strand at 7020.607 kb on + strand, within AO356_30080 at 7020.608 kb on - strand, within AO356_30080 at 7021.273 kb on + strand, within AO356_30080 at 7021.314 kb on - strand at 7021.383 kb on + strand at 7021.397 kb on + strand at 7021.397 kb on + strand at 7021.398 kb on - strand at 7021.398 kb on - strand at 7021.398 kb on - strand at 7021.398 kb on - strand at 7021.538 kb on + strand at 7021.539 kb on - strand at 7021.539 kb on - strand at 7021.688 kb on - strand, within AO356_30085 at 7021.921 kb on + strand, within AO356_30085 at 7021.922 kb on - strand, within AO356_30085 at 7021.922 kb on - strand, within AO356_30085 at 7021.993 kb on + strand, within AO356_30085 at 7021.994 kb on - strand, within AO356_30085 at 7022.215 kb on + strand, within AO356_30085 at 7022.216 kb on - strand, within AO356_30085 at 7022.221 kb on + strand, within AO356_30085 at 7022.221 kb on + strand, within AO356_30085 at 7022.221 kb on + strand, within AO356_30085 at 7022.221 kb on + strand, within AO356_30085 at 7022.221 kb on + strand, within AO356_30085 at 7022.222 kb on - strand, within AO356_30085 at 7022.222 kb on - strand, within AO356_30085 at 7022.222 kb on - strand, within AO356_30085 at 7022.222 kb on - strand, within AO356_30085 at 7022.339 kb on + strand, within AO356_30085 at 7022.339 kb on + strand, within AO356_30085 at 7022.339 kb on + strand, within AO356_30085 at 7022.341 kb on + strand, within AO356_30085 at 7022.341 kb on + strand, within AO356_30085 at 7022.342 kb on - strand, within AO356_30085 at 7022.342 kb on - strand, within AO356_30085 at 7022.347 kb on + strand, within AO356_30085
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 7,019,668 - -0.1 7,019,668 - -0.1 7,019,668 - -0.1 7,019,776 + +0.3 7,019,776 + -1.9 7,019,777 - -0.9 7,019,777 - +0.2 7,019,832 - +0.6 7,019,832 - +0.1 7,019,832 - -0.7 7,019,874 + AO356_30075 0.11 +0.5 7,019,874 + AO356_30075 0.11 -0.5 7,019,984 + AO356_30075 0.27 +0.2 7,019,984 + AO356_30075 0.27 -0.2 7,019,984 + AO356_30075 0.27 +0.2 7,019,984 + AO356_30075 0.27 +0.5 7,019,984 + AO356_30075 0.27 +0.2 7,019,985 - AO356_30075 0.27 -1.0 7,020,302 + AO356_30075 0.74 -0.3 7,020,303 - AO356_30075 0.74 +0.4 7,020,472 - -0.0 7,020,480 + -0.7 7,020,481 - +0.6 7,020,481 - -1.1 7,020,493 + +0.1 7,020,517 + +1.1 7,020,517 + +0.2 7,020,517 + +0.1 7,020,517 + +0.3 7,020,517 + -0.2 7,020,518 - +0.6 7,020,518 - -0.1 7,020,518 - -2.6 7,020,518 - +0.1 7,020,521 + -0.0 7,020,522 - +0.3 7,020,607 + AO356_30080 0.13 +0.8 7,020,608 - AO356_30080 0.13 +0.8 7,021,273 + AO356_30080 0.86 +1.3 7,021,314 - +0.0 7,021,383 + -0.5 7,021,397 + +1.4 7,021,397 + -0.4 7,021,398 - -0.4 7,021,398 - +0.1 7,021,398 - +1.0 7,021,398 - +0.5 7,021,538 + -0.1 7,021,539 - -2.3 7,021,539 - -1.6 7,021,688 - AO356_30085 0.16 -0.5 7,021,921 + AO356_30085 0.34 -0.2 7,021,922 - AO356_30085 0.34 -0.3 7,021,922 - AO356_30085 0.34 -0.3 7,021,993 + AO356_30085 0.39 +0.2 7,021,994 - AO356_30085 0.39 -0.1 7,022,215 + AO356_30085 0.56 +0.3 7,022,216 - AO356_30085 0.56 +0.2 7,022,221 + AO356_30085 0.56 -0.8 7,022,221 + AO356_30085 0.56 +0.5 7,022,221 + AO356_30085 0.56 +1.1 7,022,221 + AO356_30085 0.56 -0.3 7,022,221 + AO356_30085 0.56 +0.3 7,022,222 - AO356_30085 0.56 -0.9 7,022,222 - AO356_30085 0.56 -1.1 7,022,222 - AO356_30085 0.56 -0.4 7,022,222 - AO356_30085 0.56 +0.1 7,022,339 + AO356_30085 0.65 -0.2 7,022,339 + AO356_30085 0.65 +1.0 7,022,339 + AO356_30085 0.65 +1.4 7,022,341 + AO356_30085 0.65 +0.4 7,022,341 + AO356_30085 0.65 -0.9 7,022,342 - AO356_30085 0.65 +0.2 7,022,342 - AO356_30085 0.65 +0.9 7,022,347 + AO356_30085 0.66 -0.2
Or see this region's nucleotide sequence