Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29580 and AO356_29585 are separated by 433 nucleotides AO356_29585 and AO356_29590 are separated by 244 nucleotides AO356_29590 and AO356_29595 are separated by 146 nucleotides
AO356_29580: AO356_29580 - hypothetical protein, at 6,880,351 to 6,882,033
_29580
AO356_29585: AO356_29585 - alpha/beta hydrolase, at 6,882,467 to 6,883,237
_29585
AO356_29590: AO356_29590 - ester cyclase, at 6,883,482 to 6,883,874
_29590
AO356_29595: AO356_29595 - trehalose synthase, at 6,884,021 to 6,886,087
_29595
Position (kb)
6882
6883
6884 Strain fitness (log2 ratio)
-2
-1
0
1 at 6881.576 kb on - strand, within AO356_29580 at 6881.576 kb on - strand, within AO356_29580 at 6881.807 kb on + strand, within AO356_29580 at 6881.808 kb on - strand, within AO356_29580 at 6881.964 kb on - strand at 6881.992 kb on + strand at 6881.992 kb on + strand at 6881.992 kb on + strand at 6881.993 kb on - strand at 6881.993 kb on - strand at 6881.994 kb on + strand at 6881.994 kb on + strand at 6881.994 kb on + strand at 6881.995 kb on - strand at 6882.057 kb on + strand at 6882.057 kb on + strand at 6882.057 kb on + strand at 6882.058 kb on - strand at 6882.453 kb on - strand at 6882.738 kb on - strand, within AO356_29585 at 6882.797 kb on + strand, within AO356_29585 at 6882.797 kb on + strand, within AO356_29585 at 6882.797 kb on + strand, within AO356_29585 at 6882.797 kb on + strand, within AO356_29585 at 6882.797 kb on + strand, within AO356_29585 at 6882.797 kb on + strand, within AO356_29585 at 6882.923 kb on + strand, within AO356_29585 at 6882.923 kb on + strand, within AO356_29585 at 6882.923 kb on + strand, within AO356_29585 at 6882.924 kb on - strand, within AO356_29585 at 6882.924 kb on - strand, within AO356_29585 at 6882.937 kb on + strand, within AO356_29585 at 6883.077 kb on + strand, within AO356_29585 at 6883.077 kb on + strand, within AO356_29585 at 6883.077 kb on + strand, within AO356_29585 at 6883.094 kb on - strand, within AO356_29585 at 6883.236 kb on - strand at 6883.429 kb on + strand at 6883.436 kb on + strand at 6883.506 kb on + strand at 6883.506 kb on + strand at 6883.507 kb on - strand at 6883.508 kb on + strand at 6883.515 kb on + strand at 6883.516 kb on - strand at 6883.791 kb on + strand, within AO356_29590 at 6883.791 kb on + strand, within AO356_29590 at 6883.838 kb on + strand at 6883.843 kb on + strand at 6883.938 kb on + strand at 6883.939 kb on - strand at 6883.971 kb on + strand at 6883.972 kb on - strand at 6883.972 kb on - strand at 6884.039 kb on - strand at 6884.039 kb on - strand at 6884.039 kb on - strand at 6884.104 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 6,881,576 - AO356_29580 0.73 +0.2 6,881,576 - AO356_29580 0.73 +0.7 6,881,807 + AO356_29580 0.87 -2.4 6,881,808 - AO356_29580 0.87 +0.4 6,881,964 - -0.5 6,881,992 + +0.3 6,881,992 + -0.3 6,881,992 + -0.2 6,881,993 - -2.3 6,881,993 - +1.1 6,881,994 + -1.4 6,881,994 + +0.3 6,881,994 + +0.5 6,881,995 - -0.3 6,882,057 + +1.0 6,882,057 + +1.4 6,882,057 + -0.1 6,882,058 - -0.1 6,882,453 - +0.0 6,882,738 - AO356_29585 0.35 -1.6 6,882,797 + AO356_29585 0.43 +0.5 6,882,797 + AO356_29585 0.43 +0.4 6,882,797 + AO356_29585 0.43 +0.4 6,882,797 + AO356_29585 0.43 -0.1 6,882,797 + AO356_29585 0.43 -0.8 6,882,797 + AO356_29585 0.43 -1.4 6,882,923 + AO356_29585 0.59 -0.3 6,882,923 + AO356_29585 0.59 -0.3 6,882,923 + AO356_29585 0.59 +0.1 6,882,924 - AO356_29585 0.59 +0.1 6,882,924 - AO356_29585 0.59 +0.7 6,882,937 + AO356_29585 0.61 +0.8 6,883,077 + AO356_29585 0.79 -0.4 6,883,077 + AO356_29585 0.79 -1.4 6,883,077 + AO356_29585 0.79 +0.3 6,883,094 - AO356_29585 0.81 -1.4 6,883,236 - +0.3 6,883,429 + +0.4 6,883,436 + +0.2 6,883,506 + -0.7 6,883,506 + +0.1 6,883,507 - -0.6 6,883,508 + +0.1 6,883,515 + +0.8 6,883,516 - -1.7 6,883,791 + AO356_29590 0.79 -1.1 6,883,791 + AO356_29590 0.79 -0.7 6,883,838 + +0.2 6,883,843 + -0.5 6,883,938 + +0.4 6,883,939 - +0.4 6,883,971 + -0.2 6,883,972 - -0.2 6,883,972 - +0.3 6,884,039 - -0.5 6,884,039 - +1.1 6,884,039 - +0.2 6,884,104 + -0.6
Or see this region's nucleotide sequence