Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_29315 and AO356_29320 overlap by 4 nucleotides AO356_29320 and AO356_29325 are separated by 416 nucleotides
AO356_29315: AO356_29315 - acyl-CoA dehydrogenase, at 6,817,481 to 6,818,668
_29315
AO356_29320: AO356_29320 - dihydrofolate reductase, at 6,818,665 to 6,819,624
_29320
AO356_29325: AO356_29325 - TonB-dependent receptor, at 6,820,041 to 6,822,173
_29325
Position (kb)
6818
6819
6820 Strain fitness (log2 ratio)
-2
-1
0
1 at 6817.973 kb on + strand, within AO356_29315 at 6817.974 kb on - strand, within AO356_29315 at 6818.466 kb on - strand, within AO356_29315 at 6818.839 kb on + strand, within AO356_29320 at 6818.921 kb on - strand, within AO356_29320 at 6818.955 kb on + strand, within AO356_29320 at 6818.955 kb on + strand, within AO356_29320 at 6819.264 kb on - strand, within AO356_29320 at 6819.297 kb on + strand, within AO356_29320 at 6819.472 kb on + strand, within AO356_29320 at 6819.540 kb on - strand at 6819.608 kb on + strand at 6819.609 kb on - strand at 6819.609 kb on - strand at 6819.676 kb on + strand at 6819.676 kb on + strand at 6819.676 kb on + strand at 6819.676 kb on + strand at 6819.677 kb on - strand at 6819.677 kb on - strand at 6819.677 kb on - strand at 6819.677 kb on - strand at 6819.677 kb on - strand at 6819.677 kb on - strand at 6819.677 kb on - strand at 6819.677 kb on - strand at 6819.881 kb on - strand at 6820.022 kb on + strand at 6820.023 kb on - strand at 6820.308 kb on + strand, within AO356_29325 at 6820.309 kb on - strand, within AO356_29325 at 6820.324 kb on - strand, within AO356_29325 at 6820.395 kb on + strand, within AO356_29325 at 6820.395 kb on + strand, within AO356_29325 at 6820.395 kb on + strand, within AO356_29325 at 6820.396 kb on - strand, within AO356_29325 at 6820.396 kb on - strand, within AO356_29325 at 6820.396 kb on - strand, within AO356_29325 at 6820.396 kb on - strand, within AO356_29325 at 6820.396 kb on - strand, within AO356_29325 at 6820.396 kb on - strand, within AO356_29325 at 6820.572 kb on + strand, within AO356_29325 at 6820.572 kb on + strand, within AO356_29325 at 6820.572 kb on + strand, within AO356_29325 at 6820.573 kb on - strand, within AO356_29325
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 6,817,973 + AO356_29315 0.41 +0.5 6,817,974 - AO356_29315 0.41 -0.6 6,818,466 - AO356_29315 0.83 +0.9 6,818,839 + AO356_29320 0.18 +0.5 6,818,921 - AO356_29320 0.27 +1.3 6,818,955 + AO356_29320 0.30 +0.3 6,818,955 + AO356_29320 0.30 +0.6 6,819,264 - AO356_29320 0.62 +0.0 6,819,297 + AO356_29320 0.66 -0.3 6,819,472 + AO356_29320 0.84 +1.0 6,819,540 - -0.5 6,819,608 + -1.3 6,819,609 - -0.3 6,819,609 - -0.4 6,819,676 + -0.2 6,819,676 + -0.2 6,819,676 + -0.8 6,819,676 + -0.0 6,819,677 - -1.1 6,819,677 - -0.6 6,819,677 - -0.3 6,819,677 - -0.3 6,819,677 - -0.5 6,819,677 - +0.3 6,819,677 - +0.1 6,819,677 - -0.9 6,819,881 - +0.7 6,820,022 + +0.2 6,820,023 - -0.0 6,820,308 + AO356_29325 0.13 -0.3 6,820,309 - AO356_29325 0.13 +0.0 6,820,324 - AO356_29325 0.13 +0.1 6,820,395 + AO356_29325 0.17 +0.6 6,820,395 + AO356_29325 0.17 +1.0 6,820,395 + AO356_29325 0.17 +0.3 6,820,396 - AO356_29325 0.17 -0.3 6,820,396 - AO356_29325 0.17 +0.1 6,820,396 - AO356_29325 0.17 -0.2 6,820,396 - AO356_29325 0.17 -0.0 6,820,396 - AO356_29325 0.17 -0.1 6,820,396 - AO356_29325 0.17 -2.6 6,820,572 + AO356_29325 0.25 -0.7 6,820,572 + AO356_29325 0.25 -0.2 6,820,572 + AO356_29325 0.25 -1.3 6,820,573 - AO356_29325 0.25 -0.3
Or see this region's nucleotide sequence