Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_29040

Experiment: Nalidixic 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_29035 and AO356_29040 are separated by 54 nucleotidesAO356_29040 and AO356_29045 are separated by 342 nucleotides AO356_29035: AO356_29035 - multidrug transporter CflA, at 6,748,640 to 6,749,860 _29035 AO356_29040: AO356_29040 - alanine racemase, at 6,749,915 to 6,751,189 _29040 AO356_29045: AO356_29045 - hypothetical protein, at 6,751,532 to 6,752,020 _29045 Position (kb) 6749 6750 6751 6752Strain fitness (log2 ratio) -1 0 1at 6749.148 kb on + strand, within AO356_29035at 6749.222 kb on + strand, within AO356_29035at 6749.442 kb on - strand, within AO356_29035at 6749.603 kb on + strand, within AO356_29035at 6749.604 kb on - strand, within AO356_29035at 6750.084 kb on + strand, within AO356_29040at 6750.094 kb on + strand, within AO356_29040at 6750.095 kb on - strand, within AO356_29040at 6750.145 kb on - strand, within AO356_29040at 6750.298 kb on - strand, within AO356_29040at 6750.362 kb on + strand, within AO356_29040at 6750.362 kb on + strand, within AO356_29040at 6750.362 kb on + strand, within AO356_29040at 6750.363 kb on - strand, within AO356_29040at 6750.434 kb on + strand, within AO356_29040at 6750.434 kb on + strand, within AO356_29040at 6750.434 kb on + strand, within AO356_29040at 6750.435 kb on - strand, within AO356_29040at 6750.435 kb on - strand, within AO356_29040at 6750.435 kb on - strand, within AO356_29040at 6750.435 kb on - strand, within AO356_29040at 6750.439 kb on - strand, within AO356_29040at 6750.456 kb on + strand, within AO356_29040at 6750.456 kb on + strand, within AO356_29040at 6750.456 kb on + strand, within AO356_29040at 6750.456 kb on + strand, within AO356_29040at 6750.535 kb on - strand, within AO356_29040at 6750.774 kb on + strand, within AO356_29040at 6750.774 kb on + strand, within AO356_29040at 6750.909 kb on + strand, within AO356_29040at 6750.909 kb on + strand, within AO356_29040at 6750.909 kb on + strand, within AO356_29040at 6750.910 kb on - strand, within AO356_29040at 6751.092 kb on + strandat 6751.092 kb on + strandat 6751.171 kb on + strandat 6751.171 kb on + strandat 6751.172 kb on - strandat 6751.172 kb on - strandat 6751.180 kb on + strandat 6751.181 kb on - strandat 6751.395 kb on + strandat 6751.395 kb on + strandat 6751.396 kb on - strandat 6751.396 kb on - strandat 6751.508 kb on - strandat 6751.985 kb on + strandat 6751.985 kb on + strandat 6752.001 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml
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6,749,148 + AO356_29035 0.42 -0.3
6,749,222 + AO356_29035 0.48 +0.1
6,749,442 - AO356_29035 0.66 -0.4
6,749,603 + AO356_29035 0.79 -0.5
6,749,604 - AO356_29035 0.79 -1.7
6,750,084 + AO356_29040 0.13 -0.1
6,750,094 + AO356_29040 0.14 +0.3
6,750,095 - AO356_29040 0.14 -0.1
6,750,145 - AO356_29040 0.18 +0.3
6,750,298 - AO356_29040 0.30 +0.6
6,750,362 + AO356_29040 0.35 +0.8
6,750,362 + AO356_29040 0.35 +0.9
6,750,362 + AO356_29040 0.35 -0.3
6,750,363 - AO356_29040 0.35 -0.7
6,750,434 + AO356_29040 0.41 +0.2
6,750,434 + AO356_29040 0.41 +0.6
6,750,434 + AO356_29040 0.41 -0.8
6,750,435 - AO356_29040 0.41 +0.3
6,750,435 - AO356_29040 0.41 +0.6
6,750,435 - AO356_29040 0.41 +0.5
6,750,435 - AO356_29040 0.41 +0.2
6,750,439 - AO356_29040 0.41 +0.5
6,750,456 + AO356_29040 0.42 +0.6
6,750,456 + AO356_29040 0.42 -0.2
6,750,456 + AO356_29040 0.42 +0.7
6,750,456 + AO356_29040 0.42 -0.9
6,750,535 - AO356_29040 0.49 -1.0
6,750,774 + AO356_29040 0.67 -0.4
6,750,774 + AO356_29040 0.67 +0.3
6,750,909 + AO356_29040 0.78 -0.1
6,750,909 + AO356_29040 0.78 -1.0
6,750,909 + AO356_29040 0.78 +1.2
6,750,910 - AO356_29040 0.78 -0.5
6,751,092 + +0.3
6,751,092 + +0.1
6,751,171 + +1.3
6,751,171 + -1.1
6,751,172 - +0.7
6,751,172 - -0.3
6,751,180 + -1.0
6,751,181 - +0.5
6,751,395 + -0.5
6,751,395 + +0.5
6,751,396 - +0.3
6,751,396 - -0.0
6,751,508 - +0.2
6,751,985 + +0.5
6,751,985 + -0.5
6,752,001 - -0.2

Or see this region's nucleotide sequence