Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_27980 and AO356_27985 are separated by 254 nucleotides AO356_27985 and AO356_27990 are separated by 194 nucleotides
AO356_27980: AO356_27980 - AraC family transcriptional regulator, at 6,387,929 to 6,388,849
_27980
AO356_27985: AO356_27985 - sorbitol dehydrogenase, at 6,389,104 to 6,389,877
_27985
AO356_27990: AO356_27990 - hypothetical protein, at 6,390,072 to 6,390,923
_27990
Position (kb)
6389
6390 Strain fitness (log2 ratio)
-1
0
1
2 at 6388.245 kb on + strand, within AO356_27980 at 6388.246 kb on - strand, within AO356_27980 at 6388.439 kb on - strand, within AO356_27980 at 6388.659 kb on + strand, within AO356_27980 at 6388.660 kb on - strand, within AO356_27980 at 6388.660 kb on - strand, within AO356_27980 at 6388.761 kb on + strand at 6388.864 kb on - strand at 6388.869 kb on + strand at 6388.884 kb on - strand at 6388.884 kb on - strand at 6388.933 kb on - strand at 6388.977 kb on + strand at 6389.413 kb on + strand, within AO356_27985 at 6389.414 kb on - strand, within AO356_27985 at 6389.561 kb on - strand, within AO356_27985 at 6389.827 kb on + strand at 6389.827 kb on + strand at 6389.827 kb on + strand at 6389.827 kb on + strand at 6389.827 kb on + strand at 6389.845 kb on + strand at 6389.845 kb on + strand at 6389.845 kb on + strand at 6389.845 kb on + strand at 6389.845 kb on + strand at 6389.845 kb on + strand at 6389.845 kb on + strand at 6389.845 kb on + strand at 6389.845 kb on + strand at 6389.846 kb on - strand at 6389.846 kb on - strand at 6389.846 kb on - strand at 6389.846 kb on - strand at 6389.846 kb on - strand at 6389.846 kb on - strand at 6389.846 kb on - strand at 6389.846 kb on - strand at 6389.846 kb on - strand at 6389.846 kb on - strand at 6389.846 kb on - strand at 6389.846 kb on - strand at 6389.879 kb on - strand at 6390.043 kb on + strand at 6390.044 kb on - strand at 6390.069 kb on + strand at 6390.070 kb on - strand at 6390.070 kb on - strand at 6390.070 kb on - strand at 6390.070 kb on - strand at 6390.070 kb on - strand at 6390.313 kb on - strand, within AO356_27990
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 6,388,245 + AO356_27980 0.34 +0.0 6,388,246 - AO356_27980 0.34 -1.4 6,388,439 - AO356_27980 0.55 +1.0 6,388,659 + AO356_27980 0.79 -1.4 6,388,660 - AO356_27980 0.79 -1.1 6,388,660 - AO356_27980 0.79 -1.5 6,388,761 + -0.6 6,388,864 - +1.9 6,388,869 + -0.3 6,388,884 - -0.3 6,388,884 - +0.1 6,388,933 - +0.5 6,388,977 + -0.1 6,389,413 + AO356_27985 0.40 -0.4 6,389,414 - AO356_27985 0.40 -0.3 6,389,561 - AO356_27985 0.59 +0.2 6,389,827 + +1.1 6,389,827 + +0.0 6,389,827 + -0.3 6,389,827 + +0.1 6,389,827 + -0.4 6,389,845 + -0.1 6,389,845 + -0.8 6,389,845 + +0.1 6,389,845 + +0.3 6,389,845 + -1.3 6,389,845 + -0.3 6,389,845 + -0.1 6,389,845 + +1.1 6,389,845 + -0.4 6,389,846 - -0.6 6,389,846 - -0.0 6,389,846 - +0.7 6,389,846 - +1.4 6,389,846 - +0.2 6,389,846 - -0.1 6,389,846 - +0.0 6,389,846 - +0.2 6,389,846 - +0.1 6,389,846 - -0.0 6,389,846 - +0.1 6,389,846 - -1.6 6,389,879 - +0.8 6,390,043 + -0.2 6,390,044 - -0.2 6,390,069 + +0.3 6,390,070 - -0.8 6,390,070 - -0.2 6,390,070 - +0.3 6,390,070 - -0.2 6,390,070 - +0.3 6,390,313 - AO356_27990 0.28 -0.5
Or see this region's nucleotide sequence