Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26285 and AO356_26290 are separated by 234 nucleotides AO356_26290 and AO356_26295 are separated by 36 nucleotides
AO356_26285: AO356_26285 - sugar ABC transporter substrate-binding protein, at 5,953,383 to 5,954,327
_26285
AO356_26290: AO356_26290 - TonB-dependent receptor, at 5,954,562 to 5,956,985
_26290
AO356_26295: AO356_26295 - ribosomal protein S3AE, at 5,957,022 to 5,957,423
_26295
Position (kb) 5954
5955
5956
5957 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5953.888 kb on - strand, within AO356_26285 at 5953.975 kb on - strand, within AO356_26285 at 5954.346 kb on + strand at 5954.346 kb on + strand at 5954.347 kb on - strand at 5954.465 kb on - strand at 5954.486 kb on + strand at 5954.486 kb on + strand at 5954.575 kb on + strand at 5954.576 kb on - strand at 5954.576 kb on - strand at 5954.576 kb on - strand at 5954.704 kb on - strand at 5954.901 kb on + strand, within AO356_26290 at 5954.902 kb on - strand, within AO356_26290 at 5954.992 kb on - strand, within AO356_26290 at 5955.078 kb on + strand, within AO356_26290 at 5955.078 kb on + strand, within AO356_26290 at 5955.078 kb on + strand, within AO356_26290 at 5955.078 kb on + strand, within AO356_26290 at 5955.078 kb on + strand, within AO356_26290 at 5955.079 kb on - strand, within AO356_26290 at 5955.079 kb on - strand, within AO356_26290 at 5955.229 kb on - strand, within AO356_26290 at 5955.259 kb on - strand, within AO356_26290 at 5955.414 kb on + strand, within AO356_26290 at 5955.414 kb on + strand, within AO356_26290 at 5955.414 kb on + strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.415 kb on - strand, within AO356_26290 at 5955.589 kb on + strand, within AO356_26290 at 5955.589 kb on + strand, within AO356_26290 at 5955.703 kb on - strand, within AO356_26290 at 5955.703 kb on - strand, within AO356_26290 at 5955.703 kb on - strand, within AO356_26290 at 5955.790 kb on - strand, within AO356_26290 at 5955.990 kb on + strand, within AO356_26290 at 5955.990 kb on + strand, within AO356_26290 at 5955.991 kb on - strand, within AO356_26290 at 5956.054 kb on + strand, within AO356_26290 at 5956.102 kb on - strand, within AO356_26290 at 5956.308 kb on + strand, within AO356_26290 at 5956.317 kb on + strand, within AO356_26290 at 5956.318 kb on - strand, within AO356_26290 at 5956.318 kb on - strand, within AO356_26290 at 5956.318 kb on - strand, within AO356_26290 at 5956.318 kb on - strand, within AO356_26290 at 5956.318 kb on - strand, within AO356_26290 at 5956.318 kb on - strand, within AO356_26290 at 5956.422 kb on + strand, within AO356_26290 at 5956.422 kb on + strand, within AO356_26290 at 5956.672 kb on - strand, within AO356_26290 at 5956.744 kb on - strand at 5956.759 kb on - strand at 5956.891 kb on - strand at 5956.956 kb on + strand at 5956.957 kb on - strand at 5956.957 kb on - strand at 5956.957 kb on - strand at 5956.983 kb on + strand at 5957.274 kb on - strand, within AO356_26295 at 5957.541 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 5,953,888 - AO356_26285 0.53 +0.0 5,953,975 - AO356_26285 0.63 -1.0 5,954,346 + -0.1 5,954,346 + -1.0 5,954,347 - -1.4 5,954,465 - +2.5 5,954,486 + +0.5 5,954,486 + -1.7 5,954,575 + -0.0 5,954,576 - -0.1 5,954,576 - -1.4 5,954,576 - +0.3 5,954,704 - +0.4 5,954,901 + AO356_26290 0.14 +0.2 5,954,902 - AO356_26290 0.14 -0.5 5,954,992 - AO356_26290 0.18 +0.2 5,955,078 + AO356_26290 0.21 +1.3 5,955,078 + AO356_26290 0.21 -0.5 5,955,078 + AO356_26290 0.21 +0.3 5,955,078 + AO356_26290 0.21 -0.2 5,955,078 + AO356_26290 0.21 +1.1 5,955,079 - AO356_26290 0.21 +0.7 5,955,079 - AO356_26290 0.21 +0.8 5,955,229 - AO356_26290 0.28 -0.1 5,955,259 - AO356_26290 0.29 -0.4 5,955,414 + AO356_26290 0.35 +0.0 5,955,414 + AO356_26290 0.35 +0.6 5,955,414 + AO356_26290 0.35 +0.1 5,955,415 - AO356_26290 0.35 -0.2 5,955,415 - AO356_26290 0.35 -1.7 5,955,415 - AO356_26290 0.35 +0.9 5,955,415 - AO356_26290 0.35 +1.1 5,955,415 - AO356_26290 0.35 +0.3 5,955,415 - AO356_26290 0.35 -0.1 5,955,415 - AO356_26290 0.35 -0.2 5,955,415 - AO356_26290 0.35 -0.4 5,955,589 + AO356_26290 0.42 -0.6 5,955,589 + AO356_26290 0.42 +0.1 5,955,703 - AO356_26290 0.47 +0.0 5,955,703 - AO356_26290 0.47 +0.3 5,955,703 - AO356_26290 0.47 +0.9 5,955,790 - AO356_26290 0.51 +1.1 5,955,990 + AO356_26290 0.59 +0.5 5,955,990 + AO356_26290 0.59 -1.6 5,955,991 - AO356_26290 0.59 -0.1 5,956,054 + AO356_26290 0.62 +0.4 5,956,102 - AO356_26290 0.64 -0.9 5,956,308 + AO356_26290 0.72 -2.5 5,956,317 + AO356_26290 0.72 -0.7 5,956,318 - AO356_26290 0.72 +0.5 5,956,318 - AO356_26290 0.72 -0.1 5,956,318 - AO356_26290 0.72 -0.9 5,956,318 - AO356_26290 0.72 -0.0 5,956,318 - AO356_26290 0.72 +0.3 5,956,318 - AO356_26290 0.72 +0.7 5,956,422 + AO356_26290 0.77 +0.6 5,956,422 + AO356_26290 0.77 -0.4 5,956,672 - AO356_26290 0.87 +0.5 5,956,744 - -1.7 5,956,759 - +1.3 5,956,891 - -0.2 5,956,956 + +1.4 5,956,957 - +0.7 5,956,957 - -0.3 5,956,957 - +0.0 5,956,983 + +0.2 5,957,274 - AO356_26295 0.63 +2.1 5,957,541 - +1.5
Or see this region's nucleotide sequence