Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26270 and AO356_26275 are separated by 173 nucleotides AO356_26275 and AO356_26280 are separated by 241 nucleotides AO356_26280 and AO356_26285 overlap by 1 nucleotides
AO356_26270: AO356_26270 - histidine kinase, at 5,950,753 to 5,951,937
_26270
AO356_26275: AO356_26275 - cag pathogenicity island protein Cag5, at 5,952,111 to 5,952,632
_26275
AO356_26280: AO356_26280 - RNA polymerase subunit sigma, at 5,952,874 to 5,953,383
_26280
AO356_26285: AO356_26285 - sugar ABC transporter substrate-binding protein, at 5,953,383 to 5,954,327
_26285
Position (kb) 5952
5953
5954 Strain fitness (log2 ratio) -1
0
1
2 at 5952.012 kb on + strand at 5952.012 kb on + strand at 5952.012 kb on + strand at 5952.013 kb on - strand at 5952.028 kb on + strand at 5952.189 kb on + strand, within AO356_26275 at 5952.189 kb on + strand, within AO356_26275 at 5952.189 kb on + strand, within AO356_26275 at 5952.189 kb on + strand, within AO356_26275 at 5952.189 kb on + strand, within AO356_26275 at 5952.190 kb on - strand, within AO356_26275 at 5952.190 kb on - strand, within AO356_26275 at 5952.190 kb on - strand, within AO356_26275 at 5952.190 kb on - strand, within AO356_26275 at 5952.190 kb on - strand, within AO356_26275 at 5952.310 kb on - strand, within AO356_26275 at 5952.382 kb on - strand, within AO356_26275 at 5952.477 kb on + strand, within AO356_26275 at 5952.478 kb on - strand, within AO356_26275 at 5952.478 kb on - strand, within AO356_26275 at 5952.479 kb on + strand, within AO356_26275 at 5952.480 kb on - strand, within AO356_26275 at 5952.531 kb on + strand, within AO356_26275 at 5952.543 kb on + strand, within AO356_26275 at 5952.543 kb on + strand, within AO356_26275 at 5952.786 kb on + strand at 5952.888 kb on + strand at 5952.888 kb on + strand at 5952.888 kb on + strand at 5952.889 kb on - strand at 5953.064 kb on - strand, within AO356_26280 at 5953.102 kb on + strand, within AO356_26280 at 5953.129 kb on + strand, within AO356_26280 at 5953.130 kb on - strand, within AO356_26280 at 5953.134 kb on - strand, within AO356_26280 at 5953.134 kb on - strand, within AO356_26280 at 5953.134 kb on - strand, within AO356_26280 at 5953.339 kb on + strand at 5953.339 kb on + strand at 5953.354 kb on + strand at 5953.355 kb on - strand at 5953.888 kb on - strand, within AO356_26285 at 5953.975 kb on - strand, within AO356_26285 at 5954.346 kb on + strand at 5954.346 kb on + strand at 5954.347 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 5,952,012 + -1.0 5,952,012 + +0.1 5,952,012 + -0.2 5,952,013 - +0.4 5,952,028 + -0.1 5,952,189 + AO356_26275 0.15 +0.3 5,952,189 + AO356_26275 0.15 -1.4 5,952,189 + AO356_26275 0.15 +0.6 5,952,189 + AO356_26275 0.15 +1.5 5,952,189 + AO356_26275 0.15 +0.6 5,952,190 - AO356_26275 0.15 -0.8 5,952,190 - AO356_26275 0.15 -0.3 5,952,190 - AO356_26275 0.15 +1.9 5,952,190 - AO356_26275 0.15 -0.8 5,952,190 - AO356_26275 0.15 +1.9 5,952,310 - AO356_26275 0.38 -0.9 5,952,382 - AO356_26275 0.52 +0.2 5,952,477 + AO356_26275 0.70 +0.8 5,952,478 - AO356_26275 0.70 +0.0 5,952,478 - AO356_26275 0.70 +0.2 5,952,479 + AO356_26275 0.70 +0.8 5,952,480 - AO356_26275 0.71 +0.0 5,952,531 + AO356_26275 0.80 +0.3 5,952,543 + AO356_26275 0.83 +0.3 5,952,543 + AO356_26275 0.83 -1.0 5,952,786 + +0.0 5,952,888 + +0.9 5,952,888 + +1.3 5,952,888 + -0.1 5,952,889 - +0.3 5,953,064 - AO356_26280 0.37 +0.3 5,953,102 + AO356_26280 0.45 -0.2 5,953,129 + AO356_26280 0.50 +0.2 5,953,130 - AO356_26280 0.50 +0.4 5,953,134 - AO356_26280 0.51 +0.5 5,953,134 - AO356_26280 0.51 +0.7 5,953,134 - AO356_26280 0.51 +0.0 5,953,339 + +1.0 5,953,339 + -0.2 5,953,354 + -0.6 5,953,355 - -0.1 5,953,888 - AO356_26285 0.53 +0.0 5,953,975 - AO356_26285 0.63 -1.0 5,954,346 + -0.1 5,954,346 + -1.0 5,954,347 - -1.4
Or see this region's nucleotide sequence