Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_26040 and AO356_26045 overlap by 1 nucleotides AO356_26045 and AO356_26050 are separated by 271 nucleotides AO356_26050 and AO356_26055 are separated by 238 nucleotides AO356_26055 and AO356_26060 are separated by 9 nucleotides
AO356_26040: AO356_26040 - hypothetical protein, at 5,892,308 to 5,892,742
_26040
AO356_26045: AO356_26045 - metal-binding protein, at 5,892,742 to 5,893,188
_26045
AO356_26050: AO356_26050 - chemotaxis protein, at 5,893,460 to 5,895,454
_26050
AO356_26055: AO356_26055 - hypothetical protein, at 5,895,693 to 5,895,881
_26055
AO356_26060: AO356_26060 - fe2+ zn2+ uptake regulation protein, at 5,895,891 to 5,896,271
_26060
Position (kb) 5893
5894
5895
5896 Strain fitness (log2 ratio) -2
-1
0
1 at 5892.487 kb on - strand, within AO356_26040 at 5892.729 kb on + strand at 5892.729 kb on + strand at 5892.729 kb on + strand at 5892.730 kb on - strand at 5892.806 kb on + strand, within AO356_26045 at 5893.233 kb on + strand at 5893.298 kb on + strand at 5893.299 kb on - strand at 5894.305 kb on + strand, within AO356_26050 at 5894.305 kb on + strand, within AO356_26050 at 5894.305 kb on + strand, within AO356_26050 at 5894.306 kb on - strand, within AO356_26050 at 5894.306 kb on - strand, within AO356_26050 at 5894.306 kb on - strand, within AO356_26050 at 5894.469 kb on + strand, within AO356_26050 at 5894.470 kb on - strand, within AO356_26050 at 5894.471 kb on + strand, within AO356_26050 at 5894.471 kb on + strand, within AO356_26050 at 5894.471 kb on + strand, within AO356_26050 at 5894.472 kb on - strand, within AO356_26050 at 5894.472 kb on - strand, within AO356_26050 at 5894.472 kb on - strand, within AO356_26050 at 5894.531 kb on + strand, within AO356_26050 at 5894.531 kb on + strand, within AO356_26050 at 5894.531 kb on + strand, within AO356_26050 at 5894.531 kb on + strand, within AO356_26050 at 5894.531 kb on + strand, within AO356_26050 at 5894.532 kb on - strand, within AO356_26050 at 5894.532 kb on - strand, within AO356_26050 at 5894.532 kb on - strand, within AO356_26050 at 5894.532 kb on - strand, within AO356_26050 at 5894.532 kb on - strand, within AO356_26050 at 5894.532 kb on - strand, within AO356_26050 at 5894.532 kb on - strand, within AO356_26050 at 5894.621 kb on - strand, within AO356_26050 at 5894.953 kb on + strand, within AO356_26050 at 5894.954 kb on - strand, within AO356_26050 at 5894.956 kb on - strand, within AO356_26050 at 5895.021 kb on + strand, within AO356_26050 at 5895.055 kb on + strand, within AO356_26050 at 5895.055 kb on + strand, within AO356_26050 at 5895.106 kb on + strand, within AO356_26050 at 5895.106 kb on + strand, within AO356_26050 at 5895.175 kb on - strand, within AO356_26050 at 5895.197 kb on + strand, within AO356_26050 at 5895.198 kb on - strand, within AO356_26050 at 5895.314 kb on - strand at 5895.423 kb on + strand at 5895.424 kb on - strand at 5895.510 kb on + strand at 5895.511 kb on - strand at 5895.512 kb on + strand at 5895.513 kb on - strand at 5895.513 kb on - strand at 5895.513 kb on - strand at 5895.515 kb on - strand at 5895.515 kb on - strand at 5895.515 kb on - strand at 5895.538 kb on + strand at 5895.539 kb on - strand at 5895.539 kb on - strand at 5895.597 kb on + strand at 5895.598 kb on - strand at 5895.598 kb on - strand at 5895.641 kb on + strand at 5895.642 kb on - strand at 5895.674 kb on + strand at 5895.675 kb on - strand at 5895.999 kb on + strand, within AO356_26060 at 5896.312 kb on + strand at 5896.312 kb on + strand at 5896.324 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 5,892,487 - AO356_26040 0.41 -1.4 5,892,729 + +0.1 5,892,729 + +0.0 5,892,729 + -0.0 5,892,730 - -0.0 5,892,806 + AO356_26045 0.14 -0.3 5,893,233 + -0.7 5,893,298 + +0.9 5,893,299 - -0.6 5,894,305 + AO356_26050 0.42 +0.5 5,894,305 + AO356_26050 0.42 -0.5 5,894,305 + AO356_26050 0.42 -0.6 5,894,306 - AO356_26050 0.42 +0.5 5,894,306 - AO356_26050 0.42 +0.2 5,894,306 - AO356_26050 0.42 -0.5 5,894,469 + AO356_26050 0.51 -2.0 5,894,470 - AO356_26050 0.51 +0.1 5,894,471 + AO356_26050 0.51 +1.3 5,894,471 + AO356_26050 0.51 -0.9 5,894,471 + AO356_26050 0.51 +0.2 5,894,472 - AO356_26050 0.51 +0.6 5,894,472 - AO356_26050 0.51 -0.5 5,894,472 - AO356_26050 0.51 +0.3 5,894,531 + AO356_26050 0.54 +0.1 5,894,531 + AO356_26050 0.54 -0.7 5,894,531 + AO356_26050 0.54 +0.1 5,894,531 + AO356_26050 0.54 -0.4 5,894,531 + AO356_26050 0.54 +0.3 5,894,532 - AO356_26050 0.54 -0.7 5,894,532 - AO356_26050 0.54 -0.3 5,894,532 - AO356_26050 0.54 -0.5 5,894,532 - AO356_26050 0.54 +0.5 5,894,532 - AO356_26050 0.54 +0.1 5,894,532 - AO356_26050 0.54 -0.3 5,894,532 - AO356_26050 0.54 -0.1 5,894,621 - AO356_26050 0.58 +0.2 5,894,953 + AO356_26050 0.75 +1.0 5,894,954 - AO356_26050 0.75 +0.7 5,894,956 - AO356_26050 0.75 +0.5 5,895,021 + AO356_26050 0.78 +0.6 5,895,055 + AO356_26050 0.80 +0.9 5,895,055 + AO356_26050 0.80 +0.3 5,895,106 + AO356_26050 0.83 +0.5 5,895,106 + AO356_26050 0.83 +0.1 5,895,175 - AO356_26050 0.86 -0.8 5,895,197 + AO356_26050 0.87 +1.1 5,895,198 - AO356_26050 0.87 +0.4 5,895,314 - +0.3 5,895,423 + +0.1 5,895,424 - +1.3 5,895,510 + +0.6 5,895,511 - -1.5 5,895,512 + -0.7 5,895,513 - -0.3 5,895,513 - -0.1 5,895,513 - -1.1 5,895,515 - -0.5 5,895,515 - -0.6 5,895,515 - +0.8 5,895,538 + -0.9 5,895,539 - +0.1 5,895,539 - -0.3 5,895,597 + +0.3 5,895,598 - +0.3 5,895,598 - +0.1 5,895,641 + +1.0 5,895,642 - +0.3 5,895,674 + +0.2 5,895,675 - -1.2 5,895,999 + AO356_26060 0.28 -0.1 5,896,312 + +0.1 5,896,312 + +0.5 5,896,324 - +0.1
Or see this region's nucleotide sequence