Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_25870 and AO356_25875 overlap by 4 nucleotides AO356_25875 and AO356_25880 are separated by 178 nucleotides
AO356_25870: AO356_25870 - secretion protein HlyD, at 5,847,828 to 5,849,141
_25870
AO356_25875: AO356_25875 - multidrug transporter, at 5,849,138 to 5,852,233
_25875
AO356_25880: AO356_25880 - acriflavine resistance protein B, at 5,852,412 to 5,855,516
_25880
Position (kb) 5849
5850
5851
5852
5853 Strain fitness (log2 ratio) -2
-1
0
1 at 5848.337 kb on + strand, within AO356_25870 at 5848.337 kb on + strand, within AO356_25870 at 5848.338 kb on - strand, within AO356_25870 at 5848.384 kb on - strand, within AO356_25870 at 5848.822 kb on + strand, within AO356_25870 at 5848.875 kb on + strand, within AO356_25870 at 5848.904 kb on + strand, within AO356_25870 at 5848.905 kb on - strand, within AO356_25870 at 5849.054 kb on + strand at 5849.522 kb on + strand, within AO356_25875 at 5849.569 kb on + strand, within AO356_25875 at 5849.569 kb on + strand, within AO356_25875 at 5849.752 kb on + strand, within AO356_25875 at 5849.858 kb on + strand, within AO356_25875 at 5849.880 kb on - strand, within AO356_25875 at 5850.269 kb on + strand, within AO356_25875 at 5850.270 kb on - strand, within AO356_25875 at 5850.773 kb on + strand, within AO356_25875 at 5850.774 kb on - strand, within AO356_25875 at 5850.935 kb on + strand, within AO356_25875 at 5850.936 kb on - strand, within AO356_25875 at 5851.338 kb on - strand, within AO356_25875 at 5851.338 kb on - strand, within AO356_25875 at 5851.374 kb on - strand, within AO356_25875 at 5851.709 kb on - strand, within AO356_25875 at 5851.745 kb on + strand, within AO356_25875 at 5851.745 kb on + strand, within AO356_25875 at 5851.745 kb on + strand, within AO356_25875 at 5851.745 kb on + strand, within AO356_25875 at 5851.745 kb on + strand, within AO356_25875 at 5851.746 kb on - strand, within AO356_25875 at 5851.746 kb on - strand, within AO356_25875 at 5851.746 kb on - strand, within AO356_25875 at 5851.775 kb on + strand, within AO356_25875 at 5851.775 kb on + strand, within AO356_25875 at 5851.986 kb on - strand at 5852.168 kb on + strand at 5852.168 kb on + strand at 5852.168 kb on + strand at 5852.169 kb on - strand at 5852.169 kb on - strand at 5852.175 kb on - strand at 5852.230 kb on - strand at 5852.676 kb on - strand at 5852.676 kb on - strand at 5852.676 kb on - strand at 5852.676 kb on - strand at 5852.796 kb on + strand, within AO356_25880 at 5852.874 kb on + strand, within AO356_25880 at 5853.050 kb on - strand, within AO356_25880 at 5853.219 kb on + strand, within AO356_25880
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 5,848,337 + AO356_25870 0.39 -1.1 5,848,337 + AO356_25870 0.39 -0.0 5,848,338 - AO356_25870 0.39 +0.5 5,848,384 - AO356_25870 0.42 -2.5 5,848,822 + AO356_25870 0.76 +0.2 5,848,875 + AO356_25870 0.80 -0.5 5,848,904 + AO356_25870 0.82 -0.5 5,848,905 - AO356_25870 0.82 -0.0 5,849,054 + -0.3 5,849,522 + AO356_25875 0.12 +0.2 5,849,569 + AO356_25875 0.14 +0.8 5,849,569 + AO356_25875 0.14 -0.1 5,849,752 + AO356_25875 0.20 -1.1 5,849,858 + AO356_25875 0.23 +0.6 5,849,880 - AO356_25875 0.24 -0.4 5,850,269 + AO356_25875 0.37 -2.2 5,850,270 - AO356_25875 0.37 -0.5 5,850,773 + AO356_25875 0.53 -0.8 5,850,774 - AO356_25875 0.53 +0.3 5,850,935 + AO356_25875 0.58 -1.0 5,850,936 - AO356_25875 0.58 -0.1 5,851,338 - AO356_25875 0.71 -0.9 5,851,338 - AO356_25875 0.71 +1.1 5,851,374 - AO356_25875 0.72 -0.8 5,851,709 - AO356_25875 0.83 -0.5 5,851,745 + AO356_25875 0.84 +0.6 5,851,745 + AO356_25875 0.84 +0.2 5,851,745 + AO356_25875 0.84 +0.1 5,851,745 + AO356_25875 0.84 -1.8 5,851,745 + AO356_25875 0.84 +0.2 5,851,746 - AO356_25875 0.84 +1.1 5,851,746 - AO356_25875 0.84 -0.5 5,851,746 - AO356_25875 0.84 +1.5 5,851,775 + AO356_25875 0.85 +0.4 5,851,775 + AO356_25875 0.85 -0.6 5,851,986 - +0.8 5,852,168 + +0.3 5,852,168 + +0.0 5,852,168 + -1.5 5,852,169 - -0.9 5,852,169 - +0.3 5,852,175 - -1.2 5,852,230 - +0.3 5,852,676 - -1.2 5,852,676 - +0.6 5,852,676 - -0.2 5,852,676 - -0.2 5,852,796 + AO356_25880 0.12 +0.3 5,852,874 + AO356_25880 0.15 -0.8 5,853,050 - AO356_25880 0.21 -1.6 5,853,219 + AO356_25880 0.26 -0.9
Or see this region's nucleotide sequence