Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_25785

Experiment: Nalidixic 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_25780 and AO356_25785 are separated by 504 nucleotidesAO356_25785 and AO356_25790 are separated by 3 nucleotidesAO356_25790 and AO356_25795 overlap by 4 nucleotides AO356_25780: AO356_25780 - hypothetical protein, at 5,828,011 to 5,829,498 _25780 AO356_25785: AO356_25785 - hypothetical protein, at 5,830,003 to 5,831,412 _25785 AO356_25790: AO356_25790 - hypothetical protein, at 5,831,416 to 5,832,366 _25790 AO356_25795: AO356_25795 - transglutaminase, at 5,832,363 to 5,833,160 _25795 Position (kb) 5830 5831 5832Strain fitness (log2 ratio) -2 -1 0 1 2at 5829.116 kb on - strand, within AO356_25780at 5829.152 kb on + strand, within AO356_25780at 5829.394 kb on - strandat 5829.634 kb on + strandat 5829.797 kb on + strandat 5829.832 kb on + strandat 5829.833 kb on - strandat 5829.833 kb on - strandat 5829.837 kb on - strandat 5829.926 kb on + strandat 5829.980 kb on + strandat 5830.030 kb on + strandat 5830.061 kb on - strandat 5830.306 kb on + strand, within AO356_25785at 5830.307 kb on - strand, within AO356_25785at 5830.307 kb on - strand, within AO356_25785at 5830.307 kb on - strand, within AO356_25785at 5830.307 kb on - strand, within AO356_25785at 5830.414 kb on + strand, within AO356_25785at 5830.414 kb on + strand, within AO356_25785at 5830.415 kb on - strand, within AO356_25785at 5830.415 kb on - strand, within AO356_25785at 5830.415 kb on - strand, within AO356_25785at 5830.463 kb on - strand, within AO356_25785at 5830.465 kb on + strand, within AO356_25785at 5830.466 kb on - strand, within AO356_25785at 5830.466 kb on - strand, within AO356_25785at 5830.508 kb on - strand, within AO356_25785at 5830.508 kb on - strand, within AO356_25785at 5830.508 kb on - strand, within AO356_25785at 5830.508 kb on - strand, within AO356_25785at 5830.681 kb on + strand, within AO356_25785at 5830.681 kb on + strand, within AO356_25785at 5830.765 kb on + strand, within AO356_25785at 5830.765 kb on + strand, within AO356_25785at 5830.765 kb on + strand, within AO356_25785at 5830.766 kb on - strand, within AO356_25785at 5830.766 kb on - strand, within AO356_25785at 5830.766 kb on - strand, within AO356_25785at 5830.766 kb on - strand, within AO356_25785at 5830.766 kb on - strand, within AO356_25785at 5830.767 kb on + strand, within AO356_25785at 5830.767 kb on + strand, within AO356_25785at 5830.767 kb on + strand, within AO356_25785at 5830.767 kb on + strand, within AO356_25785at 5830.767 kb on + strand, within AO356_25785at 5830.828 kb on + strand, within AO356_25785at 5830.828 kb on + strand, within AO356_25785at 5830.958 kb on - strand, within AO356_25785at 5830.963 kb on + strand, within AO356_25785at 5830.964 kb on - strand, within AO356_25785at 5830.964 kb on - strand, within AO356_25785at 5830.987 kb on + strand, within AO356_25785at 5830.988 kb on - strand, within AO356_25785at 5830.988 kb on - strand, within AO356_25785at 5831.410 kb on + strandat 5831.410 kb on + strandat 5831.410 kb on + strandat 5831.444 kb on - strandat 5831.671 kb on - strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.674 kb on + strand, within AO356_25790at 5831.675 kb on - strand, within AO356_25790at 5831.675 kb on - strand, within AO356_25790at 5831.675 kb on - strand, within AO356_25790at 5831.675 kb on - strand, within AO356_25790at 5831.675 kb on - strand, within AO356_25790at 5831.677 kb on - strand, within AO356_25790at 5831.894 kb on - strand, within AO356_25790at 5832.349 kb on + strandat 5832.350 kb on - strandat 5832.350 kb on - strandat 5832.393 kb on + strandat 5832.393 kb on + strandat 5832.394 kb on - strandat 5832.394 kb on - strandat 5832.394 kb on - strandat 5832.399 kb on + strandat 5832.399 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml
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5,829,116 - AO356_25780 0.74 +0.0
5,829,152 + AO356_25780 0.77 +0.6
5,829,394 - +0.5
5,829,634 + +1.2
5,829,797 + +0.0
5,829,832 + +0.1
5,829,833 - -0.2
5,829,833 - +0.2
5,829,837 - -0.6
5,829,926 + +0.6
5,829,980 + -0.2
5,830,030 + -0.7
5,830,061 - +0.5
5,830,306 + AO356_25785 0.21 -0.2
5,830,307 - AO356_25785 0.22 -0.1
5,830,307 - AO356_25785 0.22 +0.3
5,830,307 - AO356_25785 0.22 +0.1
5,830,307 - AO356_25785 0.22 +0.2
5,830,414 + AO356_25785 0.29 -0.2
5,830,414 + AO356_25785 0.29 +1.3
5,830,415 - AO356_25785 0.29 -1.7
5,830,415 - AO356_25785 0.29 -1.5
5,830,415 - AO356_25785 0.29 +0.1
5,830,463 - AO356_25785 0.33 +0.2
5,830,465 + AO356_25785 0.33 +0.2
5,830,466 - AO356_25785 0.33 +0.5
5,830,466 - AO356_25785 0.33 +1.1
5,830,508 - AO356_25785 0.36 +0.1
5,830,508 - AO356_25785 0.36 -0.2
5,830,508 - AO356_25785 0.36 +0.5
5,830,508 - AO356_25785 0.36 -0.2
5,830,681 + AO356_25785 0.48 +0.2
5,830,681 + AO356_25785 0.48 +0.5
5,830,765 + AO356_25785 0.54 +0.1
5,830,765 + AO356_25785 0.54 -0.2
5,830,765 + AO356_25785 0.54 +0.8
5,830,766 - AO356_25785 0.54 +0.3
5,830,766 - AO356_25785 0.54 +0.5
5,830,766 - AO356_25785 0.54 +0.6
5,830,766 - AO356_25785 0.54 +0.1
5,830,766 - AO356_25785 0.54 +0.2
5,830,767 + AO356_25785 0.54 +0.6
5,830,767 + AO356_25785 0.54 -1.0
5,830,767 + AO356_25785 0.54 +0.0
5,830,767 + AO356_25785 0.54 +0.3
5,830,767 + AO356_25785 0.54 +0.3
5,830,828 + AO356_25785 0.59 +0.4
5,830,828 + AO356_25785 0.59 -1.0
5,830,958 - AO356_25785 0.68 -0.4
5,830,963 + AO356_25785 0.68 +0.1
5,830,964 - AO356_25785 0.68 -0.1
5,830,964 - AO356_25785 0.68 +0.3
5,830,987 + AO356_25785 0.70 +1.0
5,830,988 - AO356_25785 0.70 +0.3
5,830,988 - AO356_25785 0.70 +0.1
5,831,410 + +0.4
5,831,410 + -0.6
5,831,410 + -0.5
5,831,444 - -1.4
5,831,671 - AO356_25790 0.27 +0.1
5,831,674 + AO356_25790 0.27 -0.5
5,831,674 + AO356_25790 0.27 +1.2
5,831,674 + AO356_25790 0.27 +0.6
5,831,674 + AO356_25790 0.27 +0.0
5,831,674 + AO356_25790 0.27 -0.6
5,831,674 + AO356_25790 0.27 +1.1
5,831,674 + AO356_25790 0.27 -1.9
5,831,674 + AO356_25790 0.27 +0.2
5,831,674 + AO356_25790 0.27 +1.9
5,831,675 - AO356_25790 0.27 +0.4
5,831,675 - AO356_25790 0.27 +0.4
5,831,675 - AO356_25790 0.27 +0.5
5,831,675 - AO356_25790 0.27 -0.1
5,831,675 - AO356_25790 0.27 +0.6
5,831,677 - AO356_25790 0.27 +0.4
5,831,894 - AO356_25790 0.50 +0.2
5,832,349 + -0.8
5,832,350 - +0.2
5,832,350 - +0.9
5,832,393 + +2.7
5,832,393 + +0.3
5,832,394 - +0.5
5,832,394 - +0.5
5,832,394 - -0.4
5,832,399 + -0.1
5,832,399 + +0.6

Or see this region's nucleotide sequence