Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_23445 and AO356_23450 are separated by 70 nucleotides AO356_23450 and AO356_23455 are separated by 4 nucleotides
AO356_23445: AO356_23445 - hypothetical protein, at 5,256,047 to 5,256,829
_23445
AO356_23450: AO356_23450 - LuxR family transcriptional regulator, at 5,256,900 to 5,257,481
_23450
AO356_23455: AO356_23455 - diguanylate cyclase, at 5,257,486 to 5,259,132
_23455
Position (kb) 5256
5257
5258 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5255.900 kb on - strand at 5255.940 kb on + strand at 5255.940 kb on + strand at 5255.941 kb on - strand at 5255.941 kb on - strand at 5255.941 kb on - strand at 5255.942 kb on + strand at 5255.942 kb on + strand at 5255.942 kb on + strand at 5255.943 kb on - strand at 5255.957 kb on - strand at 5255.959 kb on - strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.986 kb on + strand at 5255.987 kb on - strand at 5256.025 kb on + strand at 5256.026 kb on - strand at 5256.423 kb on - strand, within AO356_23445 at 5256.467 kb on + strand, within AO356_23445 at 5256.468 kb on - strand, within AO356_23445 at 5256.468 kb on - strand, within AO356_23445 at 5256.468 kb on - strand, within AO356_23445 at 5256.527 kb on + strand, within AO356_23445 at 5256.590 kb on + strand, within AO356_23445 at 5256.590 kb on + strand, within AO356_23445 at 5256.634 kb on + strand, within AO356_23445 at 5256.635 kb on - strand, within AO356_23445 at 5256.735 kb on - strand, within AO356_23445 at 5256.816 kb on - strand at 5256.925 kb on + strand at 5256.926 kb on - strand at 5256.967 kb on + strand, within AO356_23450 at 5256.967 kb on + strand, within AO356_23450 at 5256.968 kb on - strand, within AO356_23450 at 5257.018 kb on + strand, within AO356_23450 at 5257.018 kb on + strand, within AO356_23450 at 5257.018 kb on + strand, within AO356_23450 at 5257.019 kb on - strand, within AO356_23450 at 5257.233 kb on + strand, within AO356_23450 at 5257.233 kb on + strand, within AO356_23450 at 5257.274 kb on + strand, within AO356_23450 at 5257.274 kb on + strand, within AO356_23450 at 5257.274 kb on + strand, within AO356_23450 at 5257.274 kb on + strand, within AO356_23450 at 5257.275 kb on - strand, within AO356_23450 at 5257.275 kb on - strand, within AO356_23450 at 5257.275 kb on - strand, within AO356_23450 at 5257.503 kb on + strand at 5257.606 kb on - strand at 5257.962 kb on - strand, within AO356_23455 at 5258.194 kb on - strand, within AO356_23455 at 5258.194 kb on - strand, within AO356_23455 at 5258.255 kb on - strand, within AO356_23455 at 5258.375 kb on + strand, within AO356_23455 at 5258.376 kb on - strand, within AO356_23455 at 5258.376 kb on - strand, within AO356_23455 at 5258.382 kb on + strand, within AO356_23455
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 5,255,900 - -0.9 5,255,940 + -0.7 5,255,940 + +0.1 5,255,941 - -0.8 5,255,941 - -0.7 5,255,941 - -0.8 5,255,942 + +0.4 5,255,942 + -0.2 5,255,942 + +0.7 5,255,943 - -0.9 5,255,957 - -0.4 5,255,959 - -0.4 5,255,986 + -0.5 5,255,986 + -2.2 5,255,986 + +0.3 5,255,986 + -2.1 5,255,986 + -0.1 5,255,987 - -1.2 5,256,025 + -0.9 5,256,026 - +0.5 5,256,423 - AO356_23445 0.48 -0.1 5,256,467 + AO356_23445 0.54 +0.5 5,256,468 - AO356_23445 0.54 +0.6 5,256,468 - AO356_23445 0.54 +0.2 5,256,468 - AO356_23445 0.54 +0.1 5,256,527 + AO356_23445 0.61 +0.4 5,256,590 + AO356_23445 0.69 -0.1 5,256,590 + AO356_23445 0.69 +0.4 5,256,634 + AO356_23445 0.75 +0.2 5,256,635 - AO356_23445 0.75 -0.6 5,256,735 - AO356_23445 0.88 +0.7 5,256,816 - -2.9 5,256,925 + +0.4 5,256,926 - +2.9 5,256,967 + AO356_23450 0.12 +0.3 5,256,967 + AO356_23450 0.12 -1.2 5,256,968 - AO356_23450 0.12 -0.6 5,257,018 + AO356_23450 0.20 -1.0 5,257,018 + AO356_23450 0.20 +0.1 5,257,018 + AO356_23450 0.20 -0.4 5,257,019 - AO356_23450 0.20 -1.1 5,257,233 + AO356_23450 0.57 +0.4 5,257,233 + AO356_23450 0.57 -0.3 5,257,274 + AO356_23450 0.64 -0.1 5,257,274 + AO356_23450 0.64 -0.8 5,257,274 + AO356_23450 0.64 -0.3 5,257,274 + AO356_23450 0.64 +0.6 5,257,275 - AO356_23450 0.64 -1.3 5,257,275 - AO356_23450 0.64 +0.0 5,257,275 - AO356_23450 0.64 +0.1 5,257,503 + -0.2 5,257,606 - +0.4 5,257,962 - AO356_23455 0.29 +0.4 5,258,194 - AO356_23455 0.43 -1.2 5,258,194 - AO356_23455 0.43 -0.2 5,258,255 - AO356_23455 0.47 +0.2 5,258,375 + AO356_23455 0.54 -1.0 5,258,376 - AO356_23455 0.54 -0.2 5,258,376 - AO356_23455 0.54 +0.7 5,258,382 + AO356_23455 0.54 +0.7
Or see this region's nucleotide sequence