Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22210 and AO356_22215 overlap by 4 nucleotides AO356_22215 and AO356_22220 overlap by 4 nucleotides AO356_22220 and AO356_22225 overlap by 1 nucleotides AO356_22225 and AO356_22230 overlap by 1 nucleotides
AO356_22210: AO356_22210 - hypothetical protein, at 4,972,246 to 4,973,247
_22210
AO356_22215: AO356_22215 - sulfur relay protein TusE, at 4,973,244 to 4,973,579
_22215
AO356_22220: AO356_22220 - sulfur relay protein DsrH, at 4,973,576 to 4,973,869
_22220
AO356_22225: AO356_22225 - sulfur relay protein TusC, at 4,973,869 to 4,974,231
_22225
AO356_22230: AO356_22230 - sulfurtransferase, at 4,974,231 to 4,974,623
_22230
Position (kb)
4973
4974 Strain fitness (log2 ratio)
-1
0
1 at 4972.842 kb on - strand, within AO356_22210 at 4972.842 kb on - strand, within AO356_22210 at 4972.926 kb on - strand, within AO356_22210 at 4974.657 kb on - strand at 4974.700 kb on - strand at 4974.711 kb on + strand at 4974.711 kb on + strand at 4974.711 kb on + strand at 4974.712 kb on - strand at 4974.712 kb on - strand at 4974.725 kb on + strand at 4974.726 kb on - strand at 4974.753 kb on + strand at 4974.753 kb on + strand at 4974.754 kb on - strand at 4974.754 kb on - strand at 4974.754 kb on - strand at 4974.754 kb on - strand at 4974.754 kb on - strand at 4974.754 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 4,972,842 - AO356_22210 0.59 +0.2 4,972,842 - AO356_22210 0.59 -1.3 4,972,926 - AO356_22210 0.68 -0.9 4,974,657 - +0.5 4,974,700 - +0.0 4,974,711 + +0.7 4,974,711 + +0.4 4,974,711 + +0.9 4,974,712 - +0.0 4,974,712 - +0.3 4,974,725 + +0.5 4,974,726 - -0.4 4,974,753 + +0.4 4,974,753 + -0.1 4,974,754 - +0.1 4,974,754 - -0.4 4,974,754 - -0.1 4,974,754 - -0.0 4,974,754 - -0.2 4,974,754 - +1.0
Or see this region's nucleotide sequence