Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_22200 and AO356_22205 are separated by 356 nucleotides AO356_22205 and AO356_22210 are separated by 88 nucleotides
AO356_22200: AO356_22200 - sirohydrochlorin ferrochelatase, at 4,969,402 to 4,970,796
_22200
AO356_22205: AO356_22205 - glutathionyl-hydroquinone reductase YqjG, at 4,971,153 to 4,972,157
_22205
AO356_22210: AO356_22210 - hypothetical protein, at 4,972,246 to 4,973,247
_22210
Position (kb)
4971
4972
4973 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4970.200 kb on + strand, within AO356_22200 at 4970.200 kb on + strand, within AO356_22200 at 4970.201 kb on - strand, within AO356_22200 at 4970.201 kb on - strand, within AO356_22200 at 4970.417 kb on - strand, within AO356_22200 at 4970.545 kb on + strand, within AO356_22200 at 4970.545 kb on + strand, within AO356_22200 at 4970.545 kb on + strand, within AO356_22200 at 4970.545 kb on + strand, within AO356_22200 at 4970.545 kb on + strand, within AO356_22200 at 4970.545 kb on + strand, within AO356_22200 at 4970.545 kb on + strand, within AO356_22200 at 4970.545 kb on + strand, within AO356_22200 at 4970.545 kb on + strand, within AO356_22200 at 4970.546 kb on - strand, within AO356_22200 at 4970.546 kb on - strand, within AO356_22200 at 4970.546 kb on - strand, within AO356_22200 at 4970.546 kb on - strand, within AO356_22200 at 4970.751 kb on - strand at 4970.794 kb on + strand at 4971.135 kb on + strand at 4971.135 kb on + strand at 4971.136 kb on - strand at 4971.136 kb on - strand at 4971.136 kb on - strand at 4971.277 kb on + strand, within AO356_22205 at 4971.280 kb on + strand, within AO356_22205 at 4971.280 kb on + strand, within AO356_22205 at 4971.281 kb on - strand, within AO356_22205 at 4971.334 kb on + strand, within AO356_22205 at 4971.334 kb on + strand, within AO356_22205 at 4971.334 kb on + strand, within AO356_22205 at 4971.409 kb on + strand, within AO356_22205 at 4971.410 kb on - strand, within AO356_22205 at 4971.410 kb on - strand, within AO356_22205 at 4971.467 kb on - strand, within AO356_22205 at 4971.481 kb on + strand, within AO356_22205 at 4971.482 kb on - strand, within AO356_22205 at 4971.529 kb on - strand, within AO356_22205 at 4971.550 kb on + strand, within AO356_22205 at 4971.583 kb on + strand, within AO356_22205 at 4971.753 kb on - strand, within AO356_22205 at 4971.787 kb on + strand, within AO356_22205 at 4971.788 kb on - strand, within AO356_22205 at 4971.788 kb on - strand, within AO356_22205 at 4971.808 kb on + strand, within AO356_22205 at 4971.808 kb on + strand, within AO356_22205 at 4971.898 kb on + strand, within AO356_22205 at 4971.899 kb on - strand, within AO356_22205 at 4971.899 kb on - strand, within AO356_22205 at 4971.991 kb on + strand, within AO356_22205 at 4971.991 kb on + strand, within AO356_22205 at 4971.991 kb on + strand, within AO356_22205 at 4971.991 kb on + strand, within AO356_22205 at 4971.991 kb on + strand, within AO356_22205 at 4971.991 kb on + strand, within AO356_22205 at 4971.991 kb on + strand, within AO356_22205 at 4971.991 kb on + strand, within AO356_22205 at 4971.992 kb on - strand, within AO356_22205 at 4971.992 kb on - strand, within AO356_22205 at 4971.992 kb on - strand, within AO356_22205 at 4971.992 kb on - strand, within AO356_22205 at 4971.992 kb on - strand, within AO356_22205 at 4971.992 kb on - strand, within AO356_22205 at 4971.992 kb on - strand, within AO356_22205 at 4971.992 kb on - strand, within AO356_22205 at 4972.117 kb on + strand at 4972.117 kb on + strand at 4972.117 kb on + strand at 4972.118 kb on - strand at 4972.118 kb on - strand at 4972.177 kb on - strand at 4972.195 kb on + strand at 4972.195 kb on + strand at 4972.195 kb on + strand at 4972.195 kb on + strand at 4972.196 kb on - strand at 4972.203 kb on + strand at 4972.214 kb on + strand at 4972.364 kb on + strand, within AO356_22210 at 4972.365 kb on - strand, within AO356_22210 at 4972.493 kb on + strand, within AO356_22210 at 4972.842 kb on - strand, within AO356_22210 at 4972.842 kb on - strand, within AO356_22210 at 4972.926 kb on - strand, within AO356_22210
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 4,970,200 + AO356_22200 0.57 -0.9 4,970,200 + AO356_22200 0.57 +0.8 4,970,201 - AO356_22200 0.57 +1.3 4,970,201 - AO356_22200 0.57 +1.2 4,970,417 - AO356_22200 0.73 +0.0 4,970,545 + AO356_22200 0.82 -0.2 4,970,545 + AO356_22200 0.82 +1.4 4,970,545 + AO356_22200 0.82 -0.0 4,970,545 + AO356_22200 0.82 +0.9 4,970,545 + AO356_22200 0.82 +0.6 4,970,545 + AO356_22200 0.82 -0.8 4,970,545 + AO356_22200 0.82 +1.2 4,970,545 + AO356_22200 0.82 +2.0 4,970,545 + AO356_22200 0.82 +0.8 4,970,546 - AO356_22200 0.82 -0.2 4,970,546 - AO356_22200 0.82 +0.3 4,970,546 - AO356_22200 0.82 +0.3 4,970,546 - AO356_22200 0.82 +0.6 4,970,751 - -0.6 4,970,794 + +0.4 4,971,135 + -0.2 4,971,135 + +0.9 4,971,136 - +0.4 4,971,136 - -0.2 4,971,136 - +0.2 4,971,277 + AO356_22205 0.12 +0.6 4,971,280 + AO356_22205 0.13 +0.2 4,971,280 + AO356_22205 0.13 +0.3 4,971,281 - AO356_22205 0.13 -0.8 4,971,334 + AO356_22205 0.18 -0.2 4,971,334 + AO356_22205 0.18 +0.1 4,971,334 + AO356_22205 0.18 +0.3 4,971,409 + AO356_22205 0.25 -0.5 4,971,410 - AO356_22205 0.26 -0.1 4,971,410 - AO356_22205 0.26 +0.3 4,971,467 - AO356_22205 0.31 +0.4 4,971,481 + AO356_22205 0.33 +1.2 4,971,482 - AO356_22205 0.33 -0.4 4,971,529 - AO356_22205 0.37 +0.4 4,971,550 + AO356_22205 0.40 +0.1 4,971,583 + AO356_22205 0.43 +0.7 4,971,753 - AO356_22205 0.60 -0.8 4,971,787 + AO356_22205 0.63 -0.4 4,971,788 - AO356_22205 0.63 -0.6 4,971,788 - AO356_22205 0.63 -1.1 4,971,808 + AO356_22205 0.65 +0.6 4,971,808 + AO356_22205 0.65 -0.0 4,971,898 + AO356_22205 0.74 +0.9 4,971,899 - AO356_22205 0.74 +1.4 4,971,899 - AO356_22205 0.74 +1.8 4,971,991 + AO356_22205 0.83 -0.3 4,971,991 + AO356_22205 0.83 +0.7 4,971,991 + AO356_22205 0.83 +1.0 4,971,991 + AO356_22205 0.83 +0.8 4,971,991 + AO356_22205 0.83 +0.5 4,971,991 + AO356_22205 0.83 +0.8 4,971,991 + AO356_22205 0.83 -0.2 4,971,991 + AO356_22205 0.83 +0.8 4,971,992 - AO356_22205 0.83 -0.7 4,971,992 - AO356_22205 0.83 -0.0 4,971,992 - AO356_22205 0.83 -0.5 4,971,992 - AO356_22205 0.83 -0.1 4,971,992 - AO356_22205 0.83 +0.2 4,971,992 - AO356_22205 0.83 -0.3 4,971,992 - AO356_22205 0.83 -0.4 4,971,992 - AO356_22205 0.83 -0.3 4,972,117 + -0.4 4,972,117 + -0.2 4,972,117 + +0.8 4,972,118 - -0.4 4,972,118 - -2.6 4,972,177 - +0.9 4,972,195 + +0.0 4,972,195 + +1.2 4,972,195 + +0.2 4,972,195 + +0.1 4,972,196 - +0.3 4,972,203 + -0.8 4,972,214 + -0.3 4,972,364 + AO356_22210 0.12 +0.4 4,972,365 - AO356_22210 0.12 -0.4 4,972,493 + AO356_22210 0.25 -0.8 4,972,842 - AO356_22210 0.59 +0.2 4,972,842 - AO356_22210 0.59 -1.3 4,972,926 - AO356_22210 0.68 -0.9
Or see this region's nucleotide sequence