Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20985 and AO356_20990 are separated by 72 nucleotides AO356_20990 and AO356_20995 are separated by 30 nucleotides AO356_20995 and AO356_21000 are separated by 238 nucleotides AO356_21000 and AO356_21005 are separated by 153 nucleotides AO356_21005 and AO356_21010 are separated by 118 nucleotides AO356_21010 and AO356_21015 are separated by 154 nucleotides
AO356_20985: AO356_20985 - 16S ribosomal RNA, at 4,670,688 to 4,672,233
_20985
AO356_20990: AO356_20990 - tRNA-Ile, at 4,672,306 to 4,672,382
_20990
AO356_20995: AO356_20995 - tRNA-Ala, at 4,672,413 to 4,672,488
_20995
AO356_21000: AO356_21000 - 23S ribosomal RNA, at 4,672,727 to 4,675,642
_21000
AO356_21005: AO356_21005 - 5S ribosomal RNA, at 4,675,796 to 4,675,911
_21005
AO356_21010: AO356_21010 - urease-associated protein, at 4,676,030 to 4,676,431
_21010
AO356_21015: AO356_21015 - vanillate O-demethylase oxidoreductase VanB, at 4,676,586 to 4,677,044
_21015
Position (kb) 4672
4673
4674
4675
4676 Strain fitness (log2 ratio) -1
0
1 at 4675.870 kb on + strand, within AO356_21005 at 4675.968 kb on + strand at 4676.079 kb on + strand, within AO356_21010 at 4676.079 kb on + strand, within AO356_21010 at 4676.079 kb on + strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.080 kb on - strand, within AO356_21010 at 4676.133 kb on + strand, within AO356_21010 at 4676.133 kb on + strand, within AO356_21010 at 4676.133 kb on + strand, within AO356_21010 at 4676.134 kb on - strand, within AO356_21010 at 4676.146 kb on - strand, within AO356_21010 at 4676.146 kb on - strand, within AO356_21010 at 4676.280 kb on + strand, within AO356_21010 at 4676.280 kb on + strand, within AO356_21010 at 4676.280 kb on + strand, within AO356_21010 at 4676.280 kb on + strand, within AO356_21010 at 4676.281 kb on - strand, within AO356_21010 at 4676.281 kb on - strand, within AO356_21010 at 4676.350 kb on + strand, within AO356_21010 at 4676.350 kb on + strand, within AO356_21010 at 4676.350 kb on + strand, within AO356_21010 at 4676.350 kb on + strand, within AO356_21010 at 4676.350 kb on + strand, within AO356_21010 at 4676.351 kb on - strand, within AO356_21010 at 4676.351 kb on - strand, within AO356_21010 at 4676.424 kb on - strand at 4676.473 kb on + strand at 4676.473 kb on + strand at 4676.473 kb on + strand at 4676.474 kb on - strand at 4676.474 kb on - strand at 4676.524 kb on + strand at 4676.525 kb on - strand at 4676.525 kb on - strand at 4676.552 kb on + strand at 4676.552 kb on + strand at 4676.552 kb on + strand at 4676.553 kb on - strand at 4676.553 kb on - strand at 4676.553 kb on - strand at 4676.553 kb on - strand at 4676.560 kb on + strand at 4676.560 kb on + strand at 4676.560 kb on + strand at 4676.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 4,675,870 + AO356_21005 0.64 +1.6 4,675,968 + +0.8 4,676,079 + AO356_21010 0.12 +0.3 4,676,079 + AO356_21010 0.12 -0.6 4,676,079 + AO356_21010 0.12 +0.8 4,676,080 - AO356_21010 0.12 -1.1 4,676,080 - AO356_21010 0.12 +0.4 4,676,080 - AO356_21010 0.12 +0.6 4,676,080 - AO356_21010 0.12 +1.2 4,676,080 - AO356_21010 0.12 +1.1 4,676,080 - AO356_21010 0.12 +0.2 4,676,133 + AO356_21010 0.26 +0.3 4,676,133 + AO356_21010 0.26 -1.0 4,676,133 + AO356_21010 0.26 +0.4 4,676,134 - AO356_21010 0.26 -0.1 4,676,146 - AO356_21010 0.29 +0.9 4,676,146 - AO356_21010 0.29 -0.1 4,676,280 + AO356_21010 0.62 -0.6 4,676,280 + AO356_21010 0.62 -0.4 4,676,280 + AO356_21010 0.62 +1.2 4,676,280 + AO356_21010 0.62 +0.6 4,676,281 - AO356_21010 0.62 +1.1 4,676,281 - AO356_21010 0.62 -0.3 4,676,350 + AO356_21010 0.80 +0.2 4,676,350 + AO356_21010 0.80 +0.1 4,676,350 + AO356_21010 0.80 +0.8 4,676,350 + AO356_21010 0.80 +1.3 4,676,350 + AO356_21010 0.80 +0.7 4,676,351 - AO356_21010 0.80 +0.7 4,676,351 - AO356_21010 0.80 +0.5 4,676,424 - +0.7 4,676,473 + -0.4 4,676,473 + -0.6 4,676,473 + -0.6 4,676,474 - +0.8 4,676,474 - -0.2 4,676,524 + +1.0 4,676,525 - -0.1 4,676,525 - -0.6 4,676,552 + -0.8 4,676,552 + +0.3 4,676,552 + -0.2 4,676,553 - -1.5 4,676,553 - -1.3 4,676,553 - -0.5 4,676,553 - +0.2 4,676,560 + +0.3 4,676,560 + +0.0 4,676,560 + +0.7 4,676,561 - +0.3
Or see this region's nucleotide sequence