Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_20420 and AO356_20425 are separated by 308 nucleotides AO356_20425 and AO356_20430 are separated by 78 nucleotides
AO356_20420: AO356_20420 - enoyl-CoA hydratase, at 4,560,743 to 4,561,432
_20420
AO356_20425: AO356_20425 - tRNA-Ser, at 4,561,741 to 4,561,830
_20425
AO356_20430: AO356_20430 - hypothetical protein, at 4,561,909 to 4,562,268
_20430
Position (kb)
4561
4562 Strain fitness (log2 ratio)
-1
0
1 at 4560.751 kb on + strand at 4560.752 kb on - strand at 4560.752 kb on - strand at 4560.752 kb on - strand at 4561.413 kb on + strand at 4561.448 kb on - strand at 4561.448 kb on - strand at 4561.448 kb on - strand at 4561.448 kb on - strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.568 kb on + strand at 4561.570 kb on + strand at 4561.584 kb on + strand at 4561.908 kb on + strand at 4561.957 kb on + strand, within AO356_20430 at 4561.957 kb on + strand, within AO356_20430 at 4561.958 kb on - strand, within AO356_20430 at 4561.958 kb on - strand, within AO356_20430 at 4561.958 kb on - strand, within AO356_20430 at 4561.960 kb on + strand, within AO356_20430 at 4561.960 kb on + strand, within AO356_20430 at 4561.960 kb on + strand, within AO356_20430 at 4561.979 kb on + strand, within AO356_20430 at 4561.979 kb on + strand, within AO356_20430 at 4561.980 kb on - strand, within AO356_20430 at 4562.008 kb on - strand, within AO356_20430 at 4562.079 kb on + strand, within AO356_20430 at 4562.106 kb on + strand, within AO356_20430 at 4562.131 kb on + strand, within AO356_20430 at 4562.132 kb on - strand, within AO356_20430 at 4562.132 kb on - strand, within AO356_20430 at 4562.144 kb on + strand, within AO356_20430 at 4562.144 kb on + strand, within AO356_20430 at 4562.144 kb on + strand, within AO356_20430 at 4562.144 kb on + strand, within AO356_20430 at 4562.145 kb on - strand, within AO356_20430 at 4562.217 kb on + strand, within AO356_20430 at 4562.218 kb on - strand, within AO356_20430 at 4562.218 kb on - strand, within AO356_20430 at 4562.281 kb on + strand at 4562.281 kb on + strand at 4562.294 kb on - strand at 4562.320 kb on + strand at 4562.341 kb on - strand at 4562.514 kb on + strand at 4562.514 kb on + strand at 4562.514 kb on + strand at 4562.547 kb on + strand at 4562.737 kb on + strand at 4562.737 kb on + strand at 4562.760 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 4,560,751 + +1.2 4,560,752 - +1.0 4,560,752 - +0.3 4,560,752 - -1.2 4,561,413 + +0.2 4,561,448 - +0.7 4,561,448 - -1.1 4,561,448 - +0.4 4,561,448 - +0.3 4,561,568 + +0.5 4,561,568 + +0.2 4,561,568 + -0.7 4,561,568 + +0.3 4,561,568 + +0.0 4,561,568 + -1.6 4,561,568 + +0.1 4,561,568 + -0.1 4,561,568 + +0.3 4,561,570 + +0.3 4,561,584 + +0.5 4,561,908 + -0.7 4,561,957 + AO356_20430 0.13 +0.6 4,561,957 + AO356_20430 0.13 +0.8 4,561,958 - AO356_20430 0.14 -0.2 4,561,958 - AO356_20430 0.14 -0.3 4,561,958 - AO356_20430 0.14 +1.3 4,561,960 + AO356_20430 0.14 +0.7 4,561,960 + AO356_20430 0.14 +0.1 4,561,960 + AO356_20430 0.14 +0.6 4,561,979 + AO356_20430 0.19 -0.4 4,561,979 + AO356_20430 0.19 +0.8 4,561,980 - AO356_20430 0.20 -0.2 4,562,008 - AO356_20430 0.28 +1.1 4,562,079 + AO356_20430 0.47 -0.3 4,562,106 + AO356_20430 0.55 +0.3 4,562,131 + AO356_20430 0.62 -0.1 4,562,132 - AO356_20430 0.62 +0.8 4,562,132 - AO356_20430 0.62 -0.7 4,562,144 + AO356_20430 0.65 +1.0 4,562,144 + AO356_20430 0.65 -0.3 4,562,144 + AO356_20430 0.65 -0.6 4,562,144 + AO356_20430 0.65 -0.0 4,562,145 - AO356_20430 0.66 -0.6 4,562,217 + AO356_20430 0.86 -0.4 4,562,218 - AO356_20430 0.86 +0.3 4,562,218 - AO356_20430 0.86 +0.2 4,562,281 + +0.5 4,562,281 + -0.4 4,562,294 - +1.4 4,562,320 + -0.1 4,562,341 - +0.3 4,562,514 + -0.3 4,562,514 + +0.7 4,562,514 + +0.9 4,562,547 + -0.0 4,562,737 + +0.8 4,562,737 + +0.2 4,562,760 - -0.3
Or see this region's nucleotide sequence