Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_19760 and AO356_19765 are separated by 233 nucleotides AO356_19765 and AO356_19770 are separated by 181 nucleotides
AO356_19760: AO356_19760 - 5-oxo-L-prolinase, at 4,431,474 to 4,432,484
_19760
AO356_19765: AO356_19765 - helicase, at 4,432,718 to 4,433,182
_19765
AO356_19770: AO356_19770 - 3-oxoacyl-ACP synthase, at 4,433,364 to 4,434,584
_19770
Position (kb)
4432
4433
4434 Strain fitness (log2 ratio)
-1
0
1 at 4431.736 kb on - strand, within AO356_19760 at 4431.736 kb on - strand, within AO356_19760 at 4431.993 kb on + strand, within AO356_19760 at 4431.993 kb on + strand, within AO356_19760 at 4431.993 kb on + strand, within AO356_19760 at 4431.994 kb on - strand, within AO356_19760 at 4431.994 kb on - strand, within AO356_19760 at 4431.994 kb on - strand, within AO356_19760 at 4432.040 kb on + strand, within AO356_19760 at 4432.041 kb on - strand, within AO356_19760 at 4432.071 kb on + strand, within AO356_19760 at 4432.072 kb on - strand, within AO356_19760 at 4432.072 kb on - strand, within AO356_19760 at 4432.072 kb on - strand, within AO356_19760 at 4432.113 kb on - strand, within AO356_19760 at 4432.227 kb on + strand, within AO356_19760 at 4432.227 kb on + strand, within AO356_19760 at 4432.227 kb on + strand, within AO356_19760 at 4432.260 kb on + strand, within AO356_19760 at 4432.261 kb on - strand, within AO356_19760 at 4432.261 kb on - strand, within AO356_19760 at 4432.370 kb on - strand, within AO356_19760 at 4432.573 kb on + strand at 4432.574 kb on - strand at 4432.574 kb on - strand at 4432.574 kb on - strand at 4432.610 kb on - strand at 4432.610 kb on - strand at 4432.641 kb on - strand at 4432.641 kb on - strand at 4432.641 kb on - strand at 4432.641 kb on - strand at 4432.717 kb on + strand at 4432.717 kb on + strand at 4432.717 kb on + strand at 4432.718 kb on - strand at 4432.934 kb on + strand, within AO356_19765 at 4432.983 kb on - strand, within AO356_19765 at 4432.983 kb on - strand, within AO356_19765 at 4433.081 kb on + strand, within AO356_19765 at 4433.081 kb on + strand, within AO356_19765 at 4433.082 kb on - strand, within AO356_19765 at 4433.187 kb on + strand at 4433.248 kb on + strand at 4433.248 kb on + strand at 4433.248 kb on + strand at 4433.248 kb on + strand at 4433.248 kb on + strand at 4433.249 kb on - strand at 4433.249 kb on - strand at 4433.249 kb on - strand at 4433.249 kb on - strand at 4433.249 kb on - strand at 4433.249 kb on - strand at 4433.301 kb on + strand at 4433.301 kb on + strand at 4433.365 kb on + strand at 4433.365 kb on + strand at 4433.365 kb on + strand at 4433.365 kb on + strand at 4433.366 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 4,431,736 - AO356_19760 0.26 +0.5 4,431,736 - AO356_19760 0.26 -0.6 4,431,993 + AO356_19760 0.51 +0.4 4,431,993 + AO356_19760 0.51 +0.5 4,431,993 + AO356_19760 0.51 +0.1 4,431,994 - AO356_19760 0.51 +0.2 4,431,994 - AO356_19760 0.51 +0.7 4,431,994 - AO356_19760 0.51 +0.4 4,432,040 + AO356_19760 0.56 +1.3 4,432,041 - AO356_19760 0.56 -1.5 4,432,071 + AO356_19760 0.59 -0.6 4,432,072 - AO356_19760 0.59 +0.1 4,432,072 - AO356_19760 0.59 +0.0 4,432,072 - AO356_19760 0.59 +0.8 4,432,113 - AO356_19760 0.63 +1.4 4,432,227 + AO356_19760 0.74 -0.6 4,432,227 + AO356_19760 0.74 -0.7 4,432,227 + AO356_19760 0.74 -0.2 4,432,260 + AO356_19760 0.78 +0.2 4,432,261 - AO356_19760 0.78 +0.2 4,432,261 - AO356_19760 0.78 +0.1 4,432,370 - AO356_19760 0.89 +0.4 4,432,573 + -0.7 4,432,574 - -0.1 4,432,574 - -0.6 4,432,574 - +0.5 4,432,610 - +0.3 4,432,610 - +0.1 4,432,641 - -0.8 4,432,641 - +0.5 4,432,641 - +0.0 4,432,641 - -0.7 4,432,717 + +0.3 4,432,717 + -1.0 4,432,717 + -0.3 4,432,718 - +0.4 4,432,934 + AO356_19765 0.46 +0.5 4,432,983 - AO356_19765 0.57 -1.7 4,432,983 - AO356_19765 0.57 +0.1 4,433,081 + AO356_19765 0.78 +0.8 4,433,081 + AO356_19765 0.78 +0.2 4,433,082 - AO356_19765 0.78 +1.2 4,433,187 + +0.6 4,433,248 + +0.6 4,433,248 + -0.5 4,433,248 + +0.2 4,433,248 + +0.3 4,433,248 + -0.1 4,433,249 - -0.0 4,433,249 - -0.1 4,433,249 - -0.6 4,433,249 - +1.2 4,433,249 - -0.1 4,433,249 - +1.6 4,433,301 + -0.1 4,433,301 + -0.1 4,433,365 + +1.2 4,433,365 + +1.2 4,433,365 + +1.5 4,433,365 + +0.5 4,433,366 - +1.0
Or see this region's nucleotide sequence