Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_18530

Experiment: Nalidixic 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_18525 and AO356_18530 are separated by 937 nucleotidesAO356_18530 and AO356_18535 are separated by 164 nucleotidesAO356_18535 and AO356_18540 overlap by 4 nucleotides AO356_18525: AO356_18525 - mercuric reductase, at 4,167,863 to 4,168,000 _18525 AO356_18530: AO356_18530 - L-tyrosine transporter (from data), at 4,168,938 to 4,170,353 _18530 AO356_18535: AO356_18535 - class I peptide chain release factor, at 4,170,518 to 4,170,931 _18535 AO356_18540: AO356_18540 - MFS transporter, at 4,170,928 to 4,172,127 _18540 Position (kb) 4168 4169 4170 4171Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4168.000 kb on + strandat 4168.000 kb on + strandat 4168.000 kb on + strandat 4168.001 kb on - strandat 4168.012 kb on + strandat 4168.012 kb on + strandat 4168.013 kb on - strandat 4168.023 kb on + strandat 4168.023 kb on + strandat 4168.023 kb on + strandat 4168.120 kb on - strandat 4168.199 kb on + strandat 4168.199 kb on + strandat 4168.199 kb on + strandat 4168.200 kb on - strandat 4168.241 kb on + strandat 4168.241 kb on + strandat 4168.241 kb on + strandat 4168.241 kb on + strandat 4168.241 kb on + strandat 4168.241 kb on + strandat 4168.241 kb on + strandat 4168.241 kb on + strandat 4168.242 kb on - strandat 4168.246 kb on - strandat 4168.246 kb on - strandat 4168.246 kb on - strandat 4168.249 kb on + strandat 4168.372 kb on + strandat 4168.546 kb on + strandat 4168.547 kb on - strandat 4168.553 kb on - strandat 4168.553 kb on - strandat 4168.553 kb on - strandat 4168.683 kb on + strandat 4168.684 kb on - strandat 4168.684 kb on - strandat 4168.700 kb on + strandat 4168.796 kb on - strandat 4168.796 kb on - strandat 4168.796 kb on - strandat 4168.796 kb on - strandat 4168.796 kb on - strandat 4168.902 kb on - strandat 4169.193 kb on + strand, within AO356_18530at 4169.194 kb on - strand, within AO356_18530at 4169.194 kb on - strand, within AO356_18530at 4169.194 kb on - strand, within AO356_18530at 4169.244 kb on + strand, within AO356_18530at 4169.244 kb on + strand, within AO356_18530at 4169.244 kb on + strand, within AO356_18530at 4169.244 kb on + strand, within AO356_18530at 4169.245 kb on - strand, within AO356_18530at 4169.245 kb on - strand, within AO356_18530at 4169.245 kb on - strand, within AO356_18530at 4169.245 kb on - strand, within AO356_18530at 4169.245 kb on - strand, within AO356_18530at 4169.245 kb on - strand, within AO356_18530at 4169.286 kb on + strand, within AO356_18530at 4169.286 kb on + strand, within AO356_18530at 4169.286 kb on + strand, within AO356_18530at 4169.286 kb on + strand, within AO356_18530at 4169.286 kb on + strand, within AO356_18530at 4169.286 kb on + strand, within AO356_18530at 4169.286 kb on + strand, within AO356_18530at 4169.286 kb on + strand, within AO356_18530at 4169.286 kb on + strand, within AO356_18530at 4169.286 kb on + strand, within AO356_18530at 4169.286 kb on + strand, within AO356_18530at 4169.287 kb on - strand, within AO356_18530at 4169.287 kb on - strand, within AO356_18530at 4169.287 kb on - strand, within AO356_18530at 4169.287 kb on - strand, within AO356_18530at 4169.287 kb on - strand, within AO356_18530at 4169.454 kb on + strand, within AO356_18530at 4169.454 kb on + strand, within AO356_18530at 4169.454 kb on + strand, within AO356_18530at 4169.454 kb on + strand, within AO356_18530at 4169.455 kb on - strand, within AO356_18530at 4169.455 kb on - strand, within AO356_18530at 4169.455 kb on - strand, within AO356_18530at 4169.455 kb on - strand, within AO356_18530at 4169.455 kb on - strand, within AO356_18530at 4169.682 kb on + strand, within AO356_18530at 4169.682 kb on + strand, within AO356_18530at 4169.682 kb on + strand, within AO356_18530at 4169.683 kb on - strand, within AO356_18530at 4169.763 kb on + strand, within AO356_18530at 4169.764 kb on - strand, within AO356_18530at 4169.822 kb on + strand, within AO356_18530at 4169.823 kb on - strand, within AO356_18530at 4169.862 kb on + strand, within AO356_18530at 4169.862 kb on + strand, within AO356_18530at 4169.863 kb on - strand, within AO356_18530at 4169.863 kb on - strand, within AO356_18530at 4169.863 kb on - strand, within AO356_18530at 4169.863 kb on - strand, within AO356_18530at 4169.877 kb on + strand, within AO356_18530at 4169.877 kb on + strand, within AO356_18530at 4169.877 kb on + strand, within AO356_18530at 4169.878 kb on - strand, within AO356_18530at 4169.878 kb on - strand, within AO356_18530at 4169.878 kb on - strand, within AO356_18530at 4169.878 kb on - strand, within AO356_18530at 4169.966 kb on - strand, within AO356_18530at 4170.018 kb on + strand, within AO356_18530at 4170.018 kb on + strand, within AO356_18530at 4170.018 kb on + strand, within AO356_18530at 4170.018 kb on + strand, within AO356_18530at 4170.018 kb on + strand, within AO356_18530at 4170.099 kb on + strand, within AO356_18530at 4170.099 kb on + strand, within AO356_18530at 4170.100 kb on - strand, within AO356_18530at 4170.100 kb on - strand, within AO356_18530at 4170.100 kb on - strand, within AO356_18530at 4170.183 kb on + strand, within AO356_18530at 4170.183 kb on + strand, within AO356_18530at 4170.183 kb on + strand, within AO356_18530at 4170.183 kb on + strand, within AO356_18530at 4170.183 kb on + strand, within AO356_18530at 4170.183 kb on + strand, within AO356_18530at 4170.184 kb on - strand, within AO356_18530at 4170.184 kb on - strand, within AO356_18530at 4170.184 kb on - strand, within AO356_18530at 4170.184 kb on - strand, within AO356_18530at 4170.184 kb on - strand, within AO356_18530at 4170.184 kb on - strand, within AO356_18530at 4170.294 kb on + strandat 4170.294 kb on + strandat 4170.294 kb on + strandat 4170.295 kb on - strandat 4170.295 kb on - strandat 4170.295 kb on - strandat 4170.351 kb on + strandat 4170.351 kb on + strandat 4170.351 kb on + strandat 4170.351 kb on + strandat 4170.352 kb on - strandat 4170.352 kb on - strandat 4170.352 kb on - strandat 4170.352 kb on - strandat 4170.352 kb on - strandat 4170.405 kb on + strandat 4170.405 kb on + strandat 4170.459 kb on + strandat 4170.460 kb on - strandat 4170.671 kb on + strand, within AO356_18535at 4170.671 kb on + strand, within AO356_18535at 4170.672 kb on - strand, within AO356_18535at 4170.672 kb on - strand, within AO356_18535at 4170.747 kb on - strand, within AO356_18535at 4170.747 kb on - strand, within AO356_18535at 4170.977 kb on + strandat 4170.978 kb on - strandat 4170.978 kb on - strandat 4170.978 kb on - strandat 4171.110 kb on - strand, within AO356_18540

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml
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4,168,000 + -1.5
4,168,000 + -0.2
4,168,000 + -1.4
4,168,001 - +0.2
4,168,012 + -0.1
4,168,012 + -0.6
4,168,013 - -0.6
4,168,023 + -0.2
4,168,023 + +0.0
4,168,023 + -0.4
4,168,120 - +0.3
4,168,199 + -0.6
4,168,199 + +0.3
4,168,199 + +1.7
4,168,200 - +1.3
4,168,241 + -0.1
4,168,241 + +0.9
4,168,241 + +0.4
4,168,241 + -0.0
4,168,241 + -0.4
4,168,241 + +0.6
4,168,241 + -0.1
4,168,241 + -0.4
4,168,242 - +0.6
4,168,246 - +0.3
4,168,246 - +1.9
4,168,246 - +1.2
4,168,249 + +1.1
4,168,372 + +0.7
4,168,546 + -1.5
4,168,547 - -0.3
4,168,553 - +1.4
4,168,553 - +1.7
4,168,553 - -0.7
4,168,683 + +0.9
4,168,684 - -0.1
4,168,684 - -0.1
4,168,700 + +0.8
4,168,796 - +0.5
4,168,796 - -2.4
4,168,796 - -0.8
4,168,796 - +0.1
4,168,796 - -0.4
4,168,902 - -0.2
4,169,193 + AO356_18530 0.18 -0.1
4,169,194 - AO356_18530 0.18 -0.1
4,169,194 - AO356_18530 0.18 -1.1
4,169,194 - AO356_18530 0.18 -1.3
4,169,244 + AO356_18530 0.22 -0.9
4,169,244 + AO356_18530 0.22 +0.4
4,169,244 + AO356_18530 0.22 -0.8
4,169,244 + AO356_18530 0.22 -0.4
4,169,245 - AO356_18530 0.22 -0.5
4,169,245 - AO356_18530 0.22 -1.0
4,169,245 - AO356_18530 0.22 -0.3
4,169,245 - AO356_18530 0.22 +0.1
4,169,245 - AO356_18530 0.22 -1.0
4,169,245 - AO356_18530 0.22 +0.1
4,169,286 + AO356_18530 0.25 -0.5
4,169,286 + AO356_18530 0.25 +0.4
4,169,286 + AO356_18530 0.25 +0.1
4,169,286 + AO356_18530 0.25 -1.4
4,169,286 + AO356_18530 0.25 +0.4
4,169,286 + AO356_18530 0.25 -0.7
4,169,286 + AO356_18530 0.25 +0.0
4,169,286 + AO356_18530 0.25 +0.0
4,169,286 + AO356_18530 0.25 -0.1
4,169,286 + AO356_18530 0.25 -0.6
4,169,286 + AO356_18530 0.25 -2.0
4,169,287 - AO356_18530 0.25 -0.6
4,169,287 - AO356_18530 0.25 +0.3
4,169,287 - AO356_18530 0.25 +0.1
4,169,287 - AO356_18530 0.25 -0.7
4,169,287 - AO356_18530 0.25 +0.2
4,169,454 + AO356_18530 0.36 +0.4
4,169,454 + AO356_18530 0.36 -0.9
4,169,454 + AO356_18530 0.36 +0.0
4,169,454 + AO356_18530 0.36 -0.2
4,169,455 - AO356_18530 0.37 +0.3
4,169,455 - AO356_18530 0.37 +0.8
4,169,455 - AO356_18530 0.37 -1.5
4,169,455 - AO356_18530 0.37 -0.5
4,169,455 - AO356_18530 0.37 +0.0
4,169,682 + AO356_18530 0.53 +0.7
4,169,682 + AO356_18530 0.53 -0.2
4,169,682 + AO356_18530 0.53 +0.4
4,169,683 - AO356_18530 0.53 -1.9
4,169,763 + AO356_18530 0.58 +0.3
4,169,764 - AO356_18530 0.58 +0.6
4,169,822 + AO356_18530 0.62 -2.4
4,169,823 - AO356_18530 0.62 -0.4
4,169,862 + AO356_18530 0.65 +0.4
4,169,862 + AO356_18530 0.65 -0.0
4,169,863 - AO356_18530 0.65 -0.2
4,169,863 - AO356_18530 0.65 -0.2
4,169,863 - AO356_18530 0.65 -0.8
4,169,863 - AO356_18530 0.65 -0.2
4,169,877 + AO356_18530 0.66 +0.2
4,169,877 + AO356_18530 0.66 -0.1
4,169,877 + AO356_18530 0.66 -0.0
4,169,878 - AO356_18530 0.66 -0.4
4,169,878 - AO356_18530 0.66 -1.0
4,169,878 - AO356_18530 0.66 -0.5
4,169,878 - AO356_18530 0.66 -0.2
4,169,966 - AO356_18530 0.73 -0.9
4,170,018 + AO356_18530 0.76 -0.2
4,170,018 + AO356_18530 0.76 +0.9
4,170,018 + AO356_18530 0.76 -1.5
4,170,018 + AO356_18530 0.76 +0.3
4,170,018 + AO356_18530 0.76 -0.2
4,170,099 + AO356_18530 0.82 -0.5
4,170,099 + AO356_18530 0.82 -1.3
4,170,100 - AO356_18530 0.82 -0.3
4,170,100 - AO356_18530 0.82 +0.2
4,170,100 - AO356_18530 0.82 -0.6
4,170,183 + AO356_18530 0.88 -0.1
4,170,183 + AO356_18530 0.88 -0.9
4,170,183 + AO356_18530 0.88 -0.9
4,170,183 + AO356_18530 0.88 +0.7
4,170,183 + AO356_18530 0.88 -0.6
4,170,183 + AO356_18530 0.88 +0.9
4,170,184 - AO356_18530 0.88 +1.1
4,170,184 - AO356_18530 0.88 -0.6
4,170,184 - AO356_18530 0.88 -0.8
4,170,184 - AO356_18530 0.88 -0.5
4,170,184 - AO356_18530 0.88 -0.7
4,170,184 - AO356_18530 0.88 -1.2
4,170,294 + -0.3
4,170,294 + -1.3
4,170,294 + +1.5
4,170,295 - -0.1
4,170,295 - -1.1
4,170,295 - -0.2
4,170,351 + +0.6
4,170,351 + +0.8
4,170,351 + -0.0
4,170,351 + +0.4
4,170,352 - -2.8
4,170,352 - -0.4
4,170,352 - -0.3
4,170,352 - -0.2
4,170,352 - +0.1
4,170,405 + -0.1
4,170,405 + +1.0
4,170,459 + +0.5
4,170,460 - -0.5
4,170,671 + AO356_18535 0.37 -0.4
4,170,671 + AO356_18535 0.37 -2.1
4,170,672 - AO356_18535 0.37 -0.3
4,170,672 - AO356_18535 0.37 -0.1
4,170,747 - AO356_18535 0.55 -0.8
4,170,747 - AO356_18535 0.55 +0.1
4,170,977 + -0.4
4,170,978 - -0.6
4,170,978 - -0.0
4,170,978 - -0.5
4,171,110 - AO356_18540 0.15 -0.0

Or see this region's nucleotide sequence