Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_06925

Experiment: Nalidixic 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_06915 and AO356_06920 overlap by 4 nucleotidesAO356_06920 and AO356_06925 overlap by 70 nucleotidesAO356_06925 and AO356_06930 are separated by 46 nucleotidesAO356_06930 and AO356_06935 are separated by 147 nucleotides AO356_06915: AO356_06915 - glycosyl transferase, at 1,531,383 to 1,532,297 _06915 AO356_06920: AO356_06920 - hypothetical protein, at 1,532,294 to 1,532,686 _06920 AO356_06925: AO356_06925 - acetyltransferase, at 1,532,617 to 1,533,033 _06925 AO356_06930: AO356_06930 - lysine transporter LysE, at 1,533,080 to 1,533,709 _06930 AO356_06935: AO356_06935 - glycerate dehydrogenase, at 1,533,857 to 1,534,822 _06935 Position (kb) 1532 1533 1534Strain fitness (log2 ratio) -1 0 1 2at 1531.674 kb on + strand, within AO356_06915at 1531.674 kb on + strand, within AO356_06915at 1531.674 kb on + strand, within AO356_06915at 1531.674 kb on + strand, within AO356_06915at 1531.674 kb on + strand, within AO356_06915at 1531.675 kb on - strand, within AO356_06915at 1531.675 kb on - strand, within AO356_06915at 1531.675 kb on - strand, within AO356_06915at 1531.675 kb on - strand, within AO356_06915at 1531.675 kb on - strand, within AO356_06915at 1531.675 kb on - strand, within AO356_06915at 1531.675 kb on - strand, within AO356_06915at 1531.675 kb on - strand, within AO356_06915at 1531.675 kb on - strand, within AO356_06915at 1531.737 kb on + strand, within AO356_06915at 1531.738 kb on - strand, within AO356_06915at 1531.785 kb on + strand, within AO356_06915at 1531.785 kb on + strand, within AO356_06915at 1531.785 kb on + strand, within AO356_06915at 1531.786 kb on - strand, within AO356_06915at 1531.786 kb on - strand, within AO356_06915at 1531.786 kb on - strand, within AO356_06915at 1531.786 kb on - strand, within AO356_06915at 1531.786 kb on - strand, within AO356_06915at 1531.786 kb on - strand, within AO356_06915at 1531.786 kb on - strand, within AO356_06915at 1531.844 kb on + strand, within AO356_06915at 1531.844 kb on + strand, within AO356_06915at 1531.844 kb on + strand, within AO356_06915at 1531.844 kb on + strand, within AO356_06915at 1531.844 kb on + strand, within AO356_06915at 1531.845 kb on - strand, within AO356_06915at 1531.845 kb on - strand, within AO356_06915at 1531.845 kb on - strand, within AO356_06915at 1531.900 kb on - strand, within AO356_06915at 1531.932 kb on + strand, within AO356_06915at 1531.945 kb on + strand, within AO356_06915at 1531.945 kb on + strand, within AO356_06915at 1531.946 kb on - strand, within AO356_06915at 1531.946 kb on - strand, within AO356_06915at 1531.992 kb on + strand, within AO356_06915at 1532.061 kb on + strand, within AO356_06915at 1532.061 kb on + strand, within AO356_06915at 1532.061 kb on + strand, within AO356_06915at 1532.136 kb on - strand, within AO356_06915at 1532.163 kb on + strand, within AO356_06915at 1532.163 kb on + strand, within AO356_06915at 1532.163 kb on + strand, within AO356_06915at 1532.163 kb on + strand, within AO356_06915at 1532.164 kb on - strand, within AO356_06915at 1532.164 kb on - strand, within AO356_06915at 1532.164 kb on - strand, within AO356_06915at 1532.164 kb on - strand, within AO356_06915at 1532.400 kb on - strand, within AO356_06920at 1532.420 kb on + strand, within AO356_06920at 1532.420 kb on + strand, within AO356_06920at 1532.420 kb on + strand, within AO356_06920at 1532.420 kb on + strand, within AO356_06920at 1532.420 kb on + strand, within AO356_06920at 1532.420 kb on + strand, within AO356_06920at 1532.420 kb on + strand, within AO356_06920at 1532.420 kb on + strand, within AO356_06920at 1532.421 kb on - strand, within AO356_06920at 1532.421 kb on - strand, within AO356_06920at 1532.421 kb on - strand, within AO356_06920at 1532.421 kb on - strand, within AO356_06920at 1532.421 kb on - strand, within AO356_06920at 1532.421 kb on - strand, within AO356_06920at 1532.421 kb on - strand, within AO356_06920at 1532.421 kb on - strand, within AO356_06920at 1532.421 kb on - strand, within AO356_06920at 1532.477 kb on + strand, within AO356_06920at 1532.477 kb on + strand, within AO356_06920at 1532.478 kb on - strand, within AO356_06920at 1532.478 kb on - strand, within AO356_06920at 1532.478 kb on - strand, within AO356_06920at 1532.478 kb on - strand, within AO356_06920at 1532.479 kb on + strand, within AO356_06920at 1532.479 kb on + strand, within AO356_06920at 1532.479 kb on + strand, within AO356_06920at 1532.480 kb on - strand, within AO356_06920at 1533.243 kb on + strand, within AO356_06930at 1533.243 kb on + strand, within AO356_06930at 1533.244 kb on - strand, within AO356_06930at 1533.244 kb on - strand, within AO356_06930at 1533.277 kb on + strand, within AO356_06930at 1533.277 kb on + strand, within AO356_06930at 1533.456 kb on + strand, within AO356_06930at 1533.456 kb on + strand, within AO356_06930at 1533.456 kb on + strand, within AO356_06930at 1533.457 kb on - strand, within AO356_06930at 1533.457 kb on - strand, within AO356_06930at 1533.465 kb on + strand, within AO356_06930at 1533.465 kb on + strand, within AO356_06930at 1533.465 kb on + strand, within AO356_06930at 1533.466 kb on - strand, within AO356_06930at 1533.466 kb on - strand, within AO356_06930at 1533.544 kb on - strand, within AO356_06930at 1533.705 kb on + strandat 1533.705 kb on + strandat 1533.721 kb on - strandat 1533.808 kb on + strandat 1533.822 kb on + strandat 1533.822 kb on + strandat 1533.822 kb on + strandat 1533.822 kb on + strandat 1533.823 kb on - strandat 1533.823 kb on - strandat 1533.823 kb on - strandat 1533.842 kb on + strandat 1533.842 kb on + strandat 1533.842 kb on + strandat 1533.843 kb on - strandat 1533.843 kb on - strandat 1533.843 kb on - strandat 1533.843 kb on - strandat 1533.843 kb on - strandat 1533.843 kb on - strandat 1533.843 kb on - strandat 1533.849 kb on + strandat 1533.849 kb on + strandat 1533.850 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml
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1,531,674 + AO356_06915 0.32 +0.4
1,531,674 + AO356_06915 0.32 +0.2
1,531,674 + AO356_06915 0.32 +1.3
1,531,674 + AO356_06915 0.32 +0.0
1,531,674 + AO356_06915 0.32 +0.4
1,531,675 - AO356_06915 0.32 +1.5
1,531,675 - AO356_06915 0.32 +0.2
1,531,675 - AO356_06915 0.32 +1.4
1,531,675 - AO356_06915 0.32 +0.1
1,531,675 - AO356_06915 0.32 -0.8
1,531,675 - AO356_06915 0.32 +0.7
1,531,675 - AO356_06915 0.32 +1.3
1,531,675 - AO356_06915 0.32 +0.9
1,531,675 - AO356_06915 0.32 -0.0
1,531,737 + AO356_06915 0.39 +0.6
1,531,738 - AO356_06915 0.39 +0.1
1,531,785 + AO356_06915 0.44 +0.6
1,531,785 + AO356_06915 0.44 +1.0
1,531,785 + AO356_06915 0.44 +0.5
1,531,786 - AO356_06915 0.44 +1.7
1,531,786 - AO356_06915 0.44 -0.2
1,531,786 - AO356_06915 0.44 +0.9
1,531,786 - AO356_06915 0.44 +1.0
1,531,786 - AO356_06915 0.44 +0.0
1,531,786 - AO356_06915 0.44 +1.9
1,531,786 - AO356_06915 0.44 +0.6
1,531,844 + AO356_06915 0.50 +0.9
1,531,844 + AO356_06915 0.50 +0.7
1,531,844 + AO356_06915 0.50 +0.7
1,531,844 + AO356_06915 0.50 +0.8
1,531,844 + AO356_06915 0.50 +0.1
1,531,845 - AO356_06915 0.50 +1.2
1,531,845 - AO356_06915 0.50 +0.9
1,531,845 - AO356_06915 0.50 +1.0
1,531,900 - AO356_06915 0.57 +2.0
1,531,932 + AO356_06915 0.60 +1.1
1,531,945 + AO356_06915 0.61 +0.8
1,531,945 + AO356_06915 0.61 +1.1
1,531,946 - AO356_06915 0.62 +0.7
1,531,946 - AO356_06915 0.62 -0.6
1,531,992 + AO356_06915 0.67 +1.2
1,532,061 + AO356_06915 0.74 +0.3
1,532,061 + AO356_06915 0.74 -0.2
1,532,061 + AO356_06915 0.74 +0.3
1,532,136 - AO356_06915 0.82 +0.6
1,532,163 + AO356_06915 0.85 +1.3
1,532,163 + AO356_06915 0.85 +0.3
1,532,163 + AO356_06915 0.85 -0.2
1,532,163 + AO356_06915 0.85 +1.3
1,532,164 - AO356_06915 0.85 +0.5
1,532,164 - AO356_06915 0.85 -0.7
1,532,164 - AO356_06915 0.85 +1.0
1,532,164 - AO356_06915 0.85 +0.8
1,532,400 - AO356_06920 0.27 +0.4
1,532,420 + AO356_06920 0.32 +0.2
1,532,420 + AO356_06920 0.32 +0.4
1,532,420 + AO356_06920 0.32 -0.0
1,532,420 + AO356_06920 0.32 -0.8
1,532,420 + AO356_06920 0.32 +0.9
1,532,420 + AO356_06920 0.32 +0.0
1,532,420 + AO356_06920 0.32 +0.4
1,532,420 + AO356_06920 0.32 +0.9
1,532,421 - AO356_06920 0.32 +0.0
1,532,421 - AO356_06920 0.32 +0.2
1,532,421 - AO356_06920 0.32 +0.3
1,532,421 - AO356_06920 0.32 -1.4
1,532,421 - AO356_06920 0.32 -0.7
1,532,421 - AO356_06920 0.32 -0.6
1,532,421 - AO356_06920 0.32 -0.1
1,532,421 - AO356_06920 0.32 -0.1
1,532,421 - AO356_06920 0.32 -1.0
1,532,477 + AO356_06920 0.47 +0.5
1,532,477 + AO356_06920 0.47 +0.5
1,532,478 - AO356_06920 0.47 +0.3
1,532,478 - AO356_06920 0.47 -0.7
1,532,478 - AO356_06920 0.47 +0.9
1,532,478 - AO356_06920 0.47 +0.3
1,532,479 + AO356_06920 0.47 +1.0
1,532,479 + AO356_06920 0.47 -0.9
1,532,479 + AO356_06920 0.47 +1.0
1,532,480 - AO356_06920 0.47 +2.2
1,533,243 + AO356_06930 0.26 -0.4
1,533,243 + AO356_06930 0.26 +0.6
1,533,244 - AO356_06930 0.26 +0.9
1,533,244 - AO356_06930 0.26 -0.2
1,533,277 + AO356_06930 0.31 -1.0
1,533,277 + AO356_06930 0.31 -0.8
1,533,456 + AO356_06930 0.60 -0.7
1,533,456 + AO356_06930 0.60 -0.0
1,533,456 + AO356_06930 0.60 -0.7
1,533,457 - AO356_06930 0.60 +0.4
1,533,457 - AO356_06930 0.60 +0.3
1,533,465 + AO356_06930 0.61 -0.7
1,533,465 + AO356_06930 0.61 -0.7
1,533,465 + AO356_06930 0.61 -0.5
1,533,466 - AO356_06930 0.61 -0.1
1,533,466 - AO356_06930 0.61 +0.2
1,533,544 - AO356_06930 0.74 -0.3
1,533,705 + +0.8
1,533,705 + +0.0
1,533,721 - -0.0
1,533,808 + +0.1
1,533,822 + +0.2
1,533,822 + -0.0
1,533,822 + -0.4
1,533,822 + +0.0
1,533,823 - +0.3
1,533,823 - -0.9
1,533,823 - -0.6
1,533,842 + +0.3
1,533,842 + +0.4
1,533,842 + -0.5
1,533,843 - -0.4
1,533,843 - +0.1
1,533,843 - +0.4
1,533,843 - -0.5
1,533,843 - -0.2
1,533,843 - -0.2
1,533,843 - +0.3
1,533,849 + -1.1
1,533,849 + +1.2
1,533,850 - -0.5

Or see this region's nucleotide sequence