Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_06725 and AO356_06730 are separated by 4 nucleotides
AO356_06725: AO356_06725 - hypothetical protein, at 1,484,679 to 1,486,949
_06725
AO356_06730: AO356_06730 - hypothetical protein, at 1,486,954 to 1,487,595
_06730
Position (kb)
1484
1485
1486
1487 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1483.896 kb on - strand at 1484.339 kb on - strand at 1484.376 kb on - strand at 1484.458 kb on - strand at 1484.464 kb on - strand at 1484.464 kb on - strand at 1484.583 kb on - strand at 1484.921 kb on + strand, within AO356_06725 at 1484.971 kb on + strand, within AO356_06725 at 1484.973 kb on + strand, within AO356_06725 at 1484.973 kb on + strand, within AO356_06725 at 1484.974 kb on - strand, within AO356_06725 at 1485.141 kb on - strand, within AO356_06725 at 1485.362 kb on + strand, within AO356_06725 at 1485.461 kb on + strand, within AO356_06725 at 1485.494 kb on + strand, within AO356_06725 at 1485.571 kb on + strand, within AO356_06725 at 1485.597 kb on - strand, within AO356_06725 at 1485.629 kb on + strand, within AO356_06725 at 1485.631 kb on + strand, within AO356_06725 at 1485.632 kb on - strand, within AO356_06725 at 1485.635 kb on + strand, within AO356_06725 at 1485.635 kb on + strand, within AO356_06725 at 1485.635 kb on + strand, within AO356_06725 at 1485.635 kb on + strand, within AO356_06725 at 1485.636 kb on - strand, within AO356_06725 at 1485.636 kb on - strand, within AO356_06725 at 1485.636 kb on - strand, within AO356_06725 at 1485.666 kb on + strand, within AO356_06725 at 1485.774 kb on - strand, within AO356_06725 at 1485.784 kb on + strand, within AO356_06725 at 1485.784 kb on + strand, within AO356_06725 at 1485.790 kb on + strand, within AO356_06725 at 1485.858 kb on + strand, within AO356_06725 at 1485.858 kb on + strand, within AO356_06725 at 1485.862 kb on - strand, within AO356_06725 at 1485.983 kb on + strand, within AO356_06725 at 1486.107 kb on - strand, within AO356_06725 at 1486.127 kb on + strand, within AO356_06725 at 1486.217 kb on - strand, within AO356_06725 at 1486.226 kb on - strand, within AO356_06725 at 1486.226 kb on - strand, within AO356_06725 at 1486.235 kb on - strand, within AO356_06725 at 1486.241 kb on - strand, within AO356_06725 at 1486.244 kb on - strand, within AO356_06725 at 1486.333 kb on + strand, within AO356_06725 at 1486.334 kb on - strand, within AO356_06725 at 1486.353 kb on + strand, within AO356_06725 at 1486.463 kb on + strand, within AO356_06725 at 1486.487 kb on - strand, within AO356_06725 at 1486.503 kb on - strand, within AO356_06725 at 1486.774 kb on - strand at 1486.774 kb on - strand at 1486.804 kb on + strand at 1486.836 kb on - strand at 1486.931 kb on + strand at 1487.000 kb on + strand at 1487.022 kb on - strand, within AO356_06730 at 1487.045 kb on + strand, within AO356_06730 at 1487.064 kb on - strand, within AO356_06730 at 1487.097 kb on + strand, within AO356_06730 at 1487.132 kb on + strand, within AO356_06730 at 1487.171 kb on - strand, within AO356_06730 at 1487.175 kb on - strand, within AO356_06730 at 1487.199 kb on + strand, within AO356_06730 at 1487.285 kb on + strand, within AO356_06730 at 1487.286 kb on - strand, within AO356_06730 at 1487.378 kb on + strand, within AO356_06730 at 1487.404 kb on - strand, within AO356_06730 at 1487.559 kb on - strand at 1487.603 kb on + strand at 1487.650 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 1,483,896 - -0.0 1,484,339 - -0.6 1,484,376 - -0.7 1,484,458 - +0.0 1,484,464 - -0.7 1,484,464 - +0.1 1,484,583 - -0.4 1,484,921 + AO356_06725 0.11 +0.1 1,484,971 + AO356_06725 0.13 -0.8 1,484,973 + AO356_06725 0.13 +0.3 1,484,973 + AO356_06725 0.13 -0.4 1,484,974 - AO356_06725 0.13 +0.5 1,485,141 - AO356_06725 0.20 -0.3 1,485,362 + AO356_06725 0.30 -0.5 1,485,461 + AO356_06725 0.34 +0.5 1,485,494 + AO356_06725 0.36 +1.0 1,485,571 + AO356_06725 0.39 +0.7 1,485,597 - AO356_06725 0.40 -0.0 1,485,629 + AO356_06725 0.42 -1.8 1,485,631 + AO356_06725 0.42 +0.2 1,485,632 - AO356_06725 0.42 -0.1 1,485,635 + AO356_06725 0.42 -0.2 1,485,635 + AO356_06725 0.42 -0.2 1,485,635 + AO356_06725 0.42 +0.6 1,485,635 + AO356_06725 0.42 +0.3 1,485,636 - AO356_06725 0.42 -1.8 1,485,636 - AO356_06725 0.42 +0.3 1,485,636 - AO356_06725 0.42 +1.1 1,485,666 + AO356_06725 0.43 +0.8 1,485,774 - AO356_06725 0.48 +0.0 1,485,784 + AO356_06725 0.49 -0.1 1,485,784 + AO356_06725 0.49 +0.6 1,485,790 + AO356_06725 0.49 +0.4 1,485,858 + AO356_06725 0.52 +0.4 1,485,858 + AO356_06725 0.52 -2.8 1,485,862 - AO356_06725 0.52 +0.3 1,485,983 + AO356_06725 0.57 +0.4 1,486,107 - AO356_06725 0.63 +0.2 1,486,127 + AO356_06725 0.64 -0.7 1,486,217 - AO356_06725 0.68 -0.9 1,486,226 - AO356_06725 0.68 +0.4 1,486,226 - AO356_06725 0.68 +0.2 1,486,235 - AO356_06725 0.69 +0.1 1,486,241 - AO356_06725 0.69 +1.1 1,486,244 - AO356_06725 0.69 +0.2 1,486,333 + AO356_06725 0.73 +0.7 1,486,334 - AO356_06725 0.73 +0.5 1,486,353 + AO356_06725 0.74 -0.4 1,486,463 + AO356_06725 0.79 -0.2 1,486,487 - AO356_06725 0.80 -0.3 1,486,503 - AO356_06725 0.80 -0.8 1,486,774 - -0.9 1,486,774 - -0.6 1,486,804 + +0.0 1,486,836 - +0.3 1,486,931 + -0.2 1,487,000 + +0.1 1,487,022 - AO356_06730 0.11 +0.1 1,487,045 + AO356_06730 0.14 -2.4 1,487,064 - AO356_06730 0.17 +0.5 1,487,097 + AO356_06730 0.22 +0.4 1,487,132 + AO356_06730 0.28 +1.2 1,487,171 - AO356_06730 0.34 +0.8 1,487,175 - AO356_06730 0.34 -0.5 1,487,199 + AO356_06730 0.38 +0.2 1,487,285 + AO356_06730 0.52 -0.2 1,487,286 - AO356_06730 0.52 +0.1 1,487,378 + AO356_06730 0.66 -0.5 1,487,404 - AO356_06730 0.70 +0.7 1,487,559 - -0.3 1,487,603 + +0.9 1,487,650 + +1.2
Or see this region's nucleotide sequence