Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_04095 and AO356_04100 are separated by 9 nucleotides AO356_04100 and AO356_04105 are separated by 52 nucleotides
AO356_04095: AO356_04095 - agmatinase, at 921,127 to 922,077
_04095
AO356_04100: AO356_04100 - ketosteroid isomerase, at 922,087 to 922,494
_04100
AO356_04105: AO356_04105 - nitrate reductase, at 922,547 to 924,055
_04105
Position (kb) 922
923 Strain fitness (log2 ratio) -2
-1
0
1 at 921.099 kb on + strand at 921.099 kb on + strand at 921.103 kb on + strand at 921.103 kb on + strand at 921.122 kb on + strand at 921.122 kb on + strand at 921.123 kb on - strand at 921.337 kb on + strand, within AO356_04095 at 921.451 kb on + strand, within AO356_04095 at 921.452 kb on - strand, within AO356_04095 at 921.537 kb on + strand, within AO356_04095 at 921.538 kb on - strand, within AO356_04095 at 921.538 kb on - strand, within AO356_04095 at 921.538 kb on - strand, within AO356_04095 at 921.550 kb on - strand, within AO356_04095 at 921.703 kb on + strand, within AO356_04095 at 921.704 kb on - strand, within AO356_04095 at 921.704 kb on - strand, within AO356_04095 at 921.832 kb on + strand, within AO356_04095 at 921.833 kb on - strand, within AO356_04095 at 921.975 kb on - strand, within AO356_04095 at 922.036 kb on + strand at 922.037 kb on - strand at 922.037 kb on - strand at 922.053 kb on - strand at 922.162 kb on + strand, within AO356_04100 at 922.162 kb on + strand, within AO356_04100 at 922.163 kb on - strand, within AO356_04100 at 922.201 kb on + strand, within AO356_04100 at 922.201 kb on + strand, within AO356_04100 at 922.202 kb on - strand, within AO356_04100 at 922.237 kb on + strand, within AO356_04100 at 922.492 kb on + strand at 922.492 kb on + strand at 922.552 kb on + strand at 922.552 kb on + strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.553 kb on - strand at 922.558 kb on + strand at 922.558 kb on + strand at 922.564 kb on + strand at 922.564 kb on + strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.565 kb on - strand at 922.669 kb on + strand at 922.669 kb on + strand at 922.669 kb on + strand at 922.670 kb on - strand at 922.670 kb on - strand at 923.036 kb on + strand, within AO356_04105 at 923.036 kb on + strand, within AO356_04105 at 923.036 kb on + strand, within AO356_04105 at 923.037 kb on - strand, within AO356_04105 at 923.177 kb on + strand, within AO356_04105 at 923.205 kb on + strand, within AO356_04105 at 923.259 kb on - strand, within AO356_04105 at 923.259 kb on - strand, within AO356_04105 at 923.259 kb on - strand, within AO356_04105 at 923.384 kb on + strand, within AO356_04105 at 923.384 kb on + strand, within AO356_04105 at 923.384 kb on + strand, within AO356_04105 at 923.385 kb on - strand, within AO356_04105 at 923.402 kb on + strand, within AO356_04105 at 923.403 kb on - strand, within AO356_04105
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 921,099 + +0.2 921,099 + +0.7 921,103 + +0.5 921,103 + -0.2 921,122 + +0.2 921,122 + +0.0 921,123 - -0.5 921,337 + AO356_04095 0.22 +0.2 921,451 + AO356_04095 0.34 +0.2 921,452 - AO356_04095 0.34 +0.0 921,537 + AO356_04095 0.43 +0.7 921,538 - AO356_04095 0.43 -0.8 921,538 - AO356_04095 0.43 -1.5 921,538 - AO356_04095 0.43 +0.7 921,550 - AO356_04095 0.44 +0.5 921,703 + AO356_04095 0.61 +0.8 921,704 - AO356_04095 0.61 +0.7 921,704 - AO356_04095 0.61 -0.1 921,832 + AO356_04095 0.74 -0.3 921,833 - AO356_04095 0.74 +0.1 921,975 - AO356_04095 0.89 +0.5 922,036 + -0.9 922,037 - -0.3 922,037 - -0.3 922,053 - +0.9 922,162 + AO356_04100 0.18 -0.8 922,162 + AO356_04100 0.18 -0.6 922,163 - AO356_04100 0.19 -1.0 922,201 + AO356_04100 0.28 +0.4 922,201 + AO356_04100 0.28 -1.3 922,202 - AO356_04100 0.28 -0.1 922,237 + AO356_04100 0.37 +0.5 922,492 + +0.1 922,492 + -0.2 922,552 + -0.5 922,552 + -0.3 922,553 - -0.2 922,553 - -0.0 922,553 - -0.7 922,553 - -0.5 922,553 - -1.2 922,553 - +0.5 922,553 - -0.2 922,553 - +0.4 922,558 + -0.2 922,558 + +0.5 922,564 + +0.1 922,564 + -0.2 922,565 - +0.1 922,565 - -2.4 922,565 - +1.0 922,565 - -0.5 922,565 - +0.9 922,565 - +1.1 922,565 - -0.2 922,669 + +1.7 922,669 + -0.0 922,669 + +0.8 922,670 - +0.2 922,670 - -0.4 923,036 + AO356_04105 0.32 +0.7 923,036 + AO356_04105 0.32 +1.1 923,036 + AO356_04105 0.32 -1.5 923,037 - AO356_04105 0.32 -0.2 923,177 + AO356_04105 0.42 -0.6 923,205 + AO356_04105 0.44 +1.0 923,259 - AO356_04105 0.47 +0.1 923,259 - AO356_04105 0.47 -0.4 923,259 - AO356_04105 0.47 +0.2 923,384 + AO356_04105 0.55 +0.5 923,384 + AO356_04105 0.55 -0.3 923,384 + AO356_04105 0.55 +0.1 923,385 - AO356_04105 0.56 +0.2 923,402 + AO356_04105 0.57 -0.0 923,403 - AO356_04105 0.57 +0.1
Or see this region's nucleotide sequence