Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_03210 and AO356_03215 are separated by 123 nucleotides AO356_03215 and AO356_03220 are separated by 252 nucleotides AO356_03220 and AO356_03225 are separated by 56 nucleotides
AO356_03210: AO356_03210 - hypothetical protein, at 713,917 to 714,168
_03210
AO356_03215: AO356_03215 - hypothetical protein, at 714,292 to 715,263
_03215
AO356_03220: AO356_03220 - hypothetical protein, at 715,516 to 715,809
_03220
AO356_03225: AO356_03225 - esterase, at 715,866 to 716,471
_03225
Position (kb) 714
715
716 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 713.314 kb on + strand at 713.314 kb on + strand at 713.314 kb on + strand at 713.348 kb on + strand at 713.348 kb on + strand at 713.349 kb on - strand at 713.349 kb on - strand at 713.418 kb on + strand at 713.418 kb on + strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.419 kb on - strand at 713.421 kb on + strand at 713.421 kb on + strand at 713.422 kb on - strand at 713.422 kb on - strand at 713.422 kb on - strand at 713.530 kb on + strand at 713.530 kb on + strand at 713.531 kb on - strand at 713.531 kb on - strand at 713.573 kb on + strand at 713.577 kb on + strand at 713.578 kb on - strand at 713.592 kb on + strand at 713.593 kb on - strand at 713.598 kb on + strand at 713.598 kb on + strand at 713.651 kb on + strand at 713.742 kb on - strand at 713.743 kb on + strand at 713.743 kb on + strand at 713.743 kb on + strand at 713.744 kb on - strand at 713.744 kb on - strand at 713.744 kb on - strand at 713.826 kb on - strand at 713.829 kb on + strand at 713.830 kb on - strand at 713.832 kb on + strand at 713.832 kb on + strand at 713.833 kb on - strand at 713.838 kb on + strand at 713.848 kb on + strand at 713.848 kb on + strand at 713.848 kb on + strand at 713.849 kb on - strand at 713.849 kb on - strand at 713.849 kb on - strand at 713.849 kb on - strand at 713.849 kb on - strand at 713.849 kb on - strand at 713.889 kb on + strand at 713.889 kb on + strand at 713.889 kb on + strand at 713.890 kb on - strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.892 kb on + strand at 713.893 kb on - strand at 713.893 kb on - strand at 713.893 kb on - strand at 713.893 kb on - strand at 714.061 kb on + strand, within AO356_03210 at 714.066 kb on + strand, within AO356_03210 at 714.166 kb on + strand at 714.166 kb on + strand at 714.166 kb on + strand at 714.166 kb on + strand at 714.166 kb on + strand at 714.167 kb on - strand at 714.167 kb on - strand at 714.167 kb on - strand at 714.169 kb on + strand at 714.170 kb on - strand at 714.170 kb on - strand at 714.293 kb on + strand at 714.294 kb on - strand at 714.340 kb on - strand at 714.340 kb on - strand at 714.510 kb on + strand, within AO356_03215 at 714.511 kb on - strand, within AO356_03215 at 714.525 kb on - strand, within AO356_03215 at 714.554 kb on + strand, within AO356_03215 at 714.555 kb on - strand, within AO356_03215 at 714.613 kb on + strand, within AO356_03215 at 714.613 kb on + strand, within AO356_03215 at 714.613 kb on + strand, within AO356_03215 at 714.613 kb on + strand, within AO356_03215 at 714.613 kb on + strand, within AO356_03215 at 714.614 kb on - strand, within AO356_03215 at 714.614 kb on - strand, within AO356_03215 at 714.905 kb on + strand, within AO356_03215 at 714.905 kb on + strand, within AO356_03215 at 714.905 kb on + strand, within AO356_03215 at 714.905 kb on + strand, within AO356_03215 at 714.905 kb on + strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.906 kb on - strand, within AO356_03215 at 714.932 kb on + strand, within AO356_03215 at 714.932 kb on + strand, within AO356_03215 at 714.932 kb on + strand, within AO356_03215 at 714.932 kb on + strand, within AO356_03215 at 714.932 kb on + strand, within AO356_03215 at 714.933 kb on - strand, within AO356_03215 at 714.933 kb on - strand, within AO356_03215 at 714.933 kb on - strand, within AO356_03215 at 714.935 kb on + strand, within AO356_03215 at 714.935 kb on + strand, within AO356_03215 at 714.936 kb on - strand, within AO356_03215 at 715.077 kb on - strand, within AO356_03215 at 715.077 kb on - strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.088 kb on + strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.089 kb on - strand, within AO356_03215 at 715.121 kb on + strand, within AO356_03215 at 715.121 kb on + strand, within AO356_03215 at 715.122 kb on - strand, within AO356_03215 at 715.296 kb on - strand at 715.312 kb on + strand at 715.312 kb on + strand at 715.312 kb on + strand at 715.313 kb on - strand at 715.313 kb on - strand at 715.313 kb on - strand at 715.328 kb on - strand at 715.427 kb on + strand at 715.427 kb on + strand at 715.427 kb on + strand at 715.428 kb on - strand at 715.517 kb on + strand at 715.517 kb on + strand at 715.518 kb on - strand at 715.518 kb on - strand at 715.856 kb on + strand at 715.881 kb on + strand at 716.029 kb on + strand, within AO356_03225 at 716.029 kb on + strand, within AO356_03225 at 716.029 kb on + strand, within AO356_03225 at 716.030 kb on - strand, within AO356_03225 at 716.053 kb on + strand, within AO356_03225 at 716.054 kb on - strand, within AO356_03225 at 716.065 kb on + strand, within AO356_03225 at 716.066 kb on - strand, within AO356_03225
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 713,314 + +0.3 713,314 + -1.8 713,314 + +0.1 713,348 + +0.5 713,348 + +0.4 713,349 - -0.9 713,349 - -0.9 713,418 + +0.3 713,418 + -1.6 713,419 - -0.3 713,419 - -1.9 713,419 - -1.0 713,419 - -2.2 713,419 - -0.2 713,421 + -0.3 713,421 + -1.9 713,422 - -0.9 713,422 - -0.7 713,422 - -0.2 713,530 + -0.5 713,530 + +0.3 713,531 - +0.1 713,531 - -0.8 713,573 + -0.6 713,577 + +0.2 713,578 - -1.3 713,592 + -1.2 713,593 - -1.4 713,598 + -0.2 713,598 + -2.0 713,651 + -0.4 713,742 - -1.4 713,743 + -0.5 713,743 + -0.2 713,743 + +0.1 713,744 - -1.6 713,744 - -0.5 713,744 - -1.6 713,826 - -1.1 713,829 + +0.0 713,830 - +0.0 713,832 + -1.4 713,832 + +0.2 713,833 - -0.5 713,838 + -0.4 713,848 + -1.2 713,848 + -0.8 713,848 + -2.8 713,849 - -1.4 713,849 - -3.4 713,849 - -0.2 713,849 - -0.4 713,849 - -0.7 713,849 - -0.4 713,889 + +0.1 713,889 + -0.5 713,889 + -1.9 713,890 - -0.5 713,892 + -1.6 713,892 + -2.4 713,892 + +0.4 713,892 + -0.5 713,892 + +0.9 713,892 + -0.9 713,892 + +0.5 713,892 + -1.9 713,892 + +0.1 713,892 + -0.5 713,893 - -0.6 713,893 - -0.8 713,893 - -0.7 713,893 - -0.7 714,061 + AO356_03210 0.57 -0.6 714,066 + AO356_03210 0.59 -1.8 714,166 + -2.0 714,166 + -1.6 714,166 + -0.7 714,166 + -0.3 714,166 + -0.2 714,167 - -3.1 714,167 - -0.6 714,167 - -2.1 714,169 + -1.9 714,170 - -1.9 714,170 - -0.7 714,293 + -0.4 714,294 - -0.1 714,340 - -0.6 714,340 - -0.2 714,510 + AO356_03215 0.22 -1.2 714,511 - AO356_03215 0.23 -0.2 714,525 - AO356_03215 0.24 -2.5 714,554 + AO356_03215 0.27 -0.7 714,555 - AO356_03215 0.27 -1.3 714,613 + AO356_03215 0.33 -0.1 714,613 + AO356_03215 0.33 +0.8 714,613 + AO356_03215 0.33 -0.9 714,613 + AO356_03215 0.33 -1.3 714,613 + AO356_03215 0.33 +0.5 714,614 - AO356_03215 0.33 -0.4 714,614 - AO356_03215 0.33 -0.8 714,905 + AO356_03215 0.63 +0.1 714,905 + AO356_03215 0.63 +0.0 714,905 + AO356_03215 0.63 +1.2 714,905 + AO356_03215 0.63 +0.1 714,905 + AO356_03215 0.63 -0.6 714,906 - AO356_03215 0.63 +0.2 714,906 - AO356_03215 0.63 -0.2 714,906 - AO356_03215 0.63 -0.5 714,906 - AO356_03215 0.63 +0.3 714,906 - AO356_03215 0.63 +0.2 714,906 - AO356_03215 0.63 -0.8 714,932 + AO356_03215 0.66 -0.1 714,932 + AO356_03215 0.66 +0.2 714,932 + AO356_03215 0.66 -1.1 714,932 + AO356_03215 0.66 -0.9 714,932 + AO356_03215 0.66 -0.6 714,933 - AO356_03215 0.66 -1.6 714,933 - AO356_03215 0.66 -1.2 714,933 - AO356_03215 0.66 +1.0 714,935 + AO356_03215 0.66 +0.5 714,935 + AO356_03215 0.66 -0.8 714,936 - AO356_03215 0.66 -1.4 715,077 - AO356_03215 0.81 -0.8 715,077 - AO356_03215 0.81 -0.3 715,088 + AO356_03215 0.82 -1.3 715,088 + AO356_03215 0.82 +0.1 715,088 + AO356_03215 0.82 -1.4 715,088 + AO356_03215 0.82 -0.7 715,088 + AO356_03215 0.82 +0.3 715,088 + AO356_03215 0.82 -1.1 715,088 + AO356_03215 0.82 -0.8 715,088 + AO356_03215 0.82 -0.7 715,088 + AO356_03215 0.82 -0.4 715,088 + AO356_03215 0.82 -1.2 715,089 - AO356_03215 0.82 -0.7 715,089 - AO356_03215 0.82 -2.1 715,089 - AO356_03215 0.82 +0.5 715,089 - AO356_03215 0.82 +0.5 715,089 - AO356_03215 0.82 -0.4 715,089 - AO356_03215 0.82 -0.5 715,121 + AO356_03215 0.85 -0.6 715,121 + AO356_03215 0.85 -0.6 715,122 - AO356_03215 0.85 -0.9 715,296 - -1.3 715,312 + -0.6 715,312 + -0.2 715,312 + -0.0 715,313 - -0.1 715,313 - -0.5 715,313 - -0.4 715,328 - -0.0 715,427 + -1.1 715,427 + -0.0 715,427 + -1.1 715,428 - +0.2 715,517 + -1.1 715,517 + -0.2 715,518 - -0.7 715,518 - +0.6 715,856 + -0.8 715,881 + -0.7 716,029 + AO356_03225 0.27 -1.4 716,029 + AO356_03225 0.27 +0.4 716,029 + AO356_03225 0.27 +0.5 716,030 - AO356_03225 0.27 -0.6 716,053 + AO356_03225 0.31 +0.6 716,054 - AO356_03225 0.31 -0.1 716,065 + AO356_03225 0.33 +0.2 716,066 - AO356_03225 0.33 +1.1
Or see this region's nucleotide sequence