Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_02740 and AO356_02745 are separated by 4 nucleotides AO356_02745 and AO356_02750 are separated by 245 nucleotides AO356_02750 and AO356_02755 are separated by 14 nucleotides
AO356_02740: AO356_02740 - protein InvG, at 600,345 to 602,000
_02740
AO356_02745: AO356_02745 - transcriptional regulator, at 602,005 to 602,742
_02745
AO356_02750: AO356_02750 - nitrate transporter, at 602,988 to 604,199
_02750
AO356_02755: AO356_02755 - histidine kinase, at 604,214 to 604,789
_02755
Position (kb) 602
603
604
605 Strain fitness (log2 ratio) -1
0
1 at 602.021 kb on + strand at 602.022 kb on - strand at 602.152 kb on + strand, within AO356_02745 at 602.290 kb on - strand, within AO356_02745 at 602.360 kb on + strand, within AO356_02745 at 602.393 kb on + strand, within AO356_02745 at 602.393 kb on + strand, within AO356_02745 at 602.393 kb on + strand, within AO356_02745 at 602.394 kb on - strand, within AO356_02745 at 602.394 kb on - strand, within AO356_02745 at 602.503 kb on - strand, within AO356_02745 at 602.839 kb on + strand at 602.839 kb on + strand at 602.839 kb on + strand at 602.855 kb on - strand at 602.967 kb on + strand at 602.968 kb on - strand at 602.968 kb on - strand at 602.973 kb on + strand at 602.974 kb on - strand at 602.974 kb on - strand at 603.129 kb on + strand, within AO356_02750 at 603.222 kb on + strand, within AO356_02750 at 603.235 kb on - strand, within AO356_02750 at 603.235 kb on - strand, within AO356_02750 at 603.447 kb on + strand, within AO356_02750 at 603.448 kb on - strand, within AO356_02750 at 603.450 kb on + strand, within AO356_02750 at 603.450 kb on + strand, within AO356_02750 at 603.450 kb on + strand, within AO356_02750 at 603.451 kb on - strand, within AO356_02750 at 603.451 kb on - strand, within AO356_02750 at 603.608 kb on + strand, within AO356_02750 at 603.608 kb on + strand, within AO356_02750 at 603.688 kb on - strand, within AO356_02750 at 603.799 kb on - strand, within AO356_02750 at 603.846 kb on + strand, within AO356_02750 at 603.846 kb on + strand, within AO356_02750 at 603.846 kb on + strand, within AO356_02750 at 603.847 kb on - strand, within AO356_02750 at 603.847 kb on - strand, within AO356_02750 at 603.924 kb on + strand, within AO356_02750 at 603.924 kb on + strand, within AO356_02750 at 603.924 kb on + strand, within AO356_02750 at 603.924 kb on + strand, within AO356_02750 at 603.993 kb on + strand, within AO356_02750 at 603.993 kb on + strand, within AO356_02750 at 603.994 kb on - strand, within AO356_02750 at 604.032 kb on + strand, within AO356_02750 at 604.033 kb on - strand, within AO356_02750 at 604.109 kb on + strand at 604.109 kb on + strand at 604.508 kb on + strand, within AO356_02755 at 604.508 kb on + strand, within AO356_02755 at 604.508 kb on + strand, within AO356_02755 at 604.508 kb on + strand, within AO356_02755 at 604.508 kb on + strand, within AO356_02755 at 604.508 kb on + strand, within AO356_02755 at 604.508 kb on + strand, within AO356_02755 at 604.509 kb on - strand, within AO356_02755 at 604.509 kb on - strand, within AO356_02755 at 604.509 kb on - strand, within AO356_02755 at 604.509 kb on - strand, within AO356_02755 at 604.509 kb on - strand, within AO356_02755 at 604.510 kb on + strand, within AO356_02755 at 604.511 kb on - strand, within AO356_02755 at 604.698 kb on - strand, within AO356_02755 at 604.698 kb on - strand, within AO356_02755 at 604.860 kb on + strand at 604.860 kb on + strand at 604.860 kb on + strand at 605.142 kb on + strand at 605.142 kb on + strand at 605.142 kb on + strand at 605.142 kb on + strand at 605.143 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 602,021 + -0.3 602,022 - -0.4 602,152 + AO356_02745 0.20 -0.5 602,290 - AO356_02745 0.39 -0.5 602,360 + AO356_02745 0.48 +0.2 602,393 + AO356_02745 0.53 -0.6 602,393 + AO356_02745 0.53 -0.5 602,393 + AO356_02745 0.53 -1.1 602,394 - AO356_02745 0.53 -1.2 602,394 - AO356_02745 0.53 +1.5 602,503 - AO356_02745 0.67 -0.7 602,839 + +0.1 602,839 + +0.7 602,839 + +0.3 602,855 - +0.4 602,967 + +0.8 602,968 - -0.2 602,968 - +0.6 602,973 + -1.1 602,974 - +0.7 602,974 - -0.6 603,129 + AO356_02750 0.12 +0.3 603,222 + AO356_02750 0.19 -0.9 603,235 - AO356_02750 0.20 -0.0 603,235 - AO356_02750 0.20 +0.3 603,447 + AO356_02750 0.38 +0.3 603,448 - AO356_02750 0.38 -0.5 603,450 + AO356_02750 0.38 +0.7 603,450 + AO356_02750 0.38 +0.7 603,450 + AO356_02750 0.38 -0.4 603,451 - AO356_02750 0.38 -0.6 603,451 - AO356_02750 0.38 -0.7 603,608 + AO356_02750 0.51 -1.4 603,608 + AO356_02750 0.51 -0.4 603,688 - AO356_02750 0.58 +0.2 603,799 - AO356_02750 0.67 -0.5 603,846 + AO356_02750 0.71 +0.6 603,846 + AO356_02750 0.71 -1.4 603,846 + AO356_02750 0.71 -1.3 603,847 - AO356_02750 0.71 +0.1 603,847 - AO356_02750 0.71 +0.7 603,924 + AO356_02750 0.77 -0.3 603,924 + AO356_02750 0.77 -0.2 603,924 + AO356_02750 0.77 +0.1 603,924 + AO356_02750 0.77 -0.0 603,993 + AO356_02750 0.83 -0.2 603,993 + AO356_02750 0.83 +0.1 603,994 - AO356_02750 0.83 +0.2 604,032 + AO356_02750 0.86 -1.3 604,033 - AO356_02750 0.86 -0.4 604,109 + -0.8 604,109 + -0.5 604,508 + AO356_02755 0.51 -1.4 604,508 + AO356_02755 0.51 +0.1 604,508 + AO356_02755 0.51 +0.5 604,508 + AO356_02755 0.51 +0.3 604,508 + AO356_02755 0.51 -0.7 604,508 + AO356_02755 0.51 -0.3 604,508 + AO356_02755 0.51 +0.8 604,509 - AO356_02755 0.51 -1.7 604,509 - AO356_02755 0.51 +0.2 604,509 - AO356_02755 0.51 -0.9 604,509 - AO356_02755 0.51 +1.1 604,509 - AO356_02755 0.51 +0.9 604,510 + AO356_02755 0.51 +0.1 604,511 - AO356_02755 0.52 -1.6 604,698 - AO356_02755 0.84 +0.1 604,698 - AO356_02755 0.84 -1.7 604,860 + -0.3 604,860 + +0.0 604,860 + +0.0 605,142 + +0.2 605,142 + -1.0 605,142 + +0.0 605,142 + -0.6 605,143 - -0.3
Or see this region's nucleotide sequence