Strain Fitness in Pseudomonas fluorescens FW300-N2C3 around AO356_01340

Experiment: Nalidixic 0.004 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAO356_01330 and AO356_01335 are separated by 69 nucleotidesAO356_01335 and AO356_01340 overlap by 4 nucleotidesAO356_01340 and AO356_01345 overlap by 20 nucleotides AO356_01330: AO356_01330 - histidine kinase, at 310,034 to 310,474 _01330 AO356_01335: AO356_01335 - paraquat-inducible protein A, at 310,544 to 311,140 _01335 AO356_01340: AO356_01340 - paraquat-inducible protein A, at 311,137 to 311,796 _01340 AO356_01345: AO356_01345 - mammalian cell entry protein, at 311,777 to 313,435 _01345 Position (kb) 311 312Strain fitness (log2 ratio) -2 -1 0 1at 310.208 kb on + strand, within AO356_01330at 310.208 kb on + strand, within AO356_01330at 310.209 kb on - strand, within AO356_01330at 310.209 kb on - strand, within AO356_01330at 310.362 kb on + strand, within AO356_01330at 310.362 kb on + strand, within AO356_01330at 310.362 kb on + strand, within AO356_01330at 310.363 kb on - strand, within AO356_01330at 310.363 kb on - strand, within AO356_01330at 310.457 kb on + strandat 310.457 kb on + strandat 310.458 kb on - strandat 310.458 kb on - strandat 310.511 kb on + strandat 310.511 kb on + strandat 310.511 kb on + strandat 310.511 kb on + strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.512 kb on - strandat 310.513 kb on + strandat 310.514 kb on - strandat 310.593 kb on - strandat 310.593 kb on - strandat 310.751 kb on - strand, within AO356_01335at 310.822 kb on + strand, within AO356_01335at 310.822 kb on + strand, within AO356_01335at 310.823 kb on - strand, within AO356_01335at 310.910 kb on + strand, within AO356_01335at 310.911 kb on - strand, within AO356_01335at 310.911 kb on - strand, within AO356_01335at 310.911 kb on - strand, within AO356_01335at 311.305 kb on + strand, within AO356_01340at 311.305 kb on + strand, within AO356_01340at 311.305 kb on + strand, within AO356_01340at 311.305 kb on + strand, within AO356_01340at 311.305 kb on + strand, within AO356_01340at 311.306 kb on - strand, within AO356_01340at 311.329 kb on + strand, within AO356_01340at 311.329 kb on + strand, within AO356_01340at 311.330 kb on - strand, within AO356_01340at 311.330 kb on - strand, within AO356_01340at 311.330 kb on - strand, within AO356_01340at 311.330 kb on - strand, within AO356_01340at 311.451 kb on + strand, within AO356_01340at 311.452 kb on - strand, within AO356_01340at 311.452 kb on - strand, within AO356_01340at 311.496 kb on - strand, within AO356_01340at 311.496 kb on - strand, within AO356_01340at 311.519 kb on + strand, within AO356_01340at 311.519 kb on + strand, within AO356_01340at 311.519 kb on + strand, within AO356_01340at 311.532 kb on + strand, within AO356_01340at 311.533 kb on - strand, within AO356_01340at 311.994 kb on - strand, within AO356_01345at 312.124 kb on - strand, within AO356_01345at 312.261 kb on - strand, within AO356_01345at 312.261 kb on - strand, within AO356_01345at 312.261 kb on - strand, within AO356_01345at 312.261 kb on - strand, within AO356_01345at 312.261 kb on - strand, within AO356_01345at 312.333 kb on - strand, within AO356_01345at 312.368 kb on + strand, within AO356_01345at 312.368 kb on + strand, within AO356_01345at 312.368 kb on + strand, within AO356_01345at 312.434 kb on + strand, within AO356_01345at 312.434 kb on + strand, within AO356_01345at 312.435 kb on - strand, within AO356_01345at 312.435 kb on - strand, within AO356_01345at 312.435 kb on - strand, within AO356_01345at 312.435 kb on - strand, within AO356_01345at 312.435 kb on - strand, within AO356_01345at 312.435 kb on - strand, within AO356_01345at 312.435 kb on - strand, within AO356_01345at 312.435 kb on - strand, within AO356_01345at 312.435 kb on - strand, within AO356_01345at 312.435 kb on - strand, within AO356_01345at 312.435 kb on - strand, within AO356_01345at 312.662 kb on + strand, within AO356_01345

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Per-strain Table

Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml
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310,208 + AO356_01330 0.39 -0.8
310,208 + AO356_01330 0.39 +0.1
310,209 - AO356_01330 0.40 +0.3
310,209 - AO356_01330 0.40 +0.8
310,362 + AO356_01330 0.74 +0.2
310,362 + AO356_01330 0.74 -0.9
310,362 + AO356_01330 0.74 +0.2
310,363 - AO356_01330 0.75 +1.2
310,363 - AO356_01330 0.75 +1.0
310,457 + -0.4
310,457 + -1.6
310,458 - +0.6
310,458 - -1.4
310,511 + -0.6
310,511 + -0.5
310,511 + +0.2
310,511 + +0.3
310,512 - -0.8
310,512 - +0.8
310,512 - -1.5
310,512 - -0.6
310,512 - +0.3
310,512 - -1.7
310,512 - +0.8
310,512 - +0.1
310,512 - -0.4
310,513 + -0.2
310,514 - -0.4
310,593 - +0.1
310,593 - -0.8
310,751 - AO356_01335 0.35 -0.3
310,822 + AO356_01335 0.47 +0.1
310,822 + AO356_01335 0.47 -0.5
310,823 - AO356_01335 0.47 -0.8
310,910 + AO356_01335 0.61 +0.1
310,911 - AO356_01335 0.61 -1.6
310,911 - AO356_01335 0.61 +0.7
310,911 - AO356_01335 0.61 -0.5
311,305 + AO356_01340 0.25 -1.1
311,305 + AO356_01340 0.25 -0.2
311,305 + AO356_01340 0.25 -0.3
311,305 + AO356_01340 0.25 -0.4
311,305 + AO356_01340 0.25 -1.2
311,306 - AO356_01340 0.26 +0.1
311,329 + AO356_01340 0.29 -0.6
311,329 + AO356_01340 0.29 +0.5
311,330 - AO356_01340 0.29 -1.2
311,330 - AO356_01340 0.29 +0.3
311,330 - AO356_01340 0.29 -2.4
311,330 - AO356_01340 0.29 -0.8
311,451 + AO356_01340 0.48 +0.2
311,452 - AO356_01340 0.48 -0.7
311,452 - AO356_01340 0.48 -0.4
311,496 - AO356_01340 0.54 -0.1
311,496 - AO356_01340 0.54 -0.7
311,519 + AO356_01340 0.58 -0.2
311,519 + AO356_01340 0.58 +0.9
311,519 + AO356_01340 0.58 +0.2
311,532 + AO356_01340 0.60 +1.1
311,533 - AO356_01340 0.60 -1.4
311,994 - AO356_01345 0.13 -1.1
312,124 - AO356_01345 0.21 +0.3
312,261 - AO356_01345 0.29 -0.7
312,261 - AO356_01345 0.29 +0.4
312,261 - AO356_01345 0.29 -0.2
312,261 - AO356_01345 0.29 +0.3
312,261 - AO356_01345 0.29 +0.3
312,333 - AO356_01345 0.34 +0.4
312,368 + AO356_01345 0.36 +0.4
312,368 + AO356_01345 0.36 +1.1
312,368 + AO356_01345 0.36 +0.1
312,434 + AO356_01345 0.40 -0.4
312,434 + AO356_01345 0.40 +0.6
312,435 - AO356_01345 0.40 +0.3
312,435 - AO356_01345 0.40 +0.5
312,435 - AO356_01345 0.40 +0.6
312,435 - AO356_01345 0.40 -1.2
312,435 - AO356_01345 0.40 +1.0
312,435 - AO356_01345 0.40 +0.8
312,435 - AO356_01345 0.40 -0.0
312,435 - AO356_01345 0.40 +0.2
312,435 - AO356_01345 0.40 +0.0
312,435 - AO356_01345 0.40 -0.1
312,435 - AO356_01345 0.40 -0.9
312,662 + AO356_01345 0.53 +0.8

Or see this region's nucleotide sequence