Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00630 and AO356_00635 are separated by 83 nucleotides AO356_00635 and AO356_00640 are separated by 163 nucleotides AO356_00640 and AO356_00645 are separated by 144 nucleotides
AO356_00630: AO356_00630 - ferredoxin, at 135,226 to 136,362
_00630
AO356_00635: AO356_00635 - phenylacetic acid degradation protein, at 136,446 to 136,886
_00635
AO356_00640: AO356_00640 - TetR family transcriptional regulator, at 137,050 to 137,670
_00640
AO356_00645: AO356_00645 - phenol degradation protein meta, at 137,815 to 138,807
_00645
Position (kb) 136
137 Strain fitness (log2 ratio) -2
-1
0
1 at 135.487 kb on + strand, within AO356_00630 at 135.487 kb on + strand, within AO356_00630 at 135.488 kb on - strand, within AO356_00630 at 135.665 kb on - strand, within AO356_00630 at 135.665 kb on - strand, within AO356_00630 at 135.967 kb on + strand, within AO356_00630 at 135.968 kb on - strand, within AO356_00630 at 136.021 kb on + strand, within AO356_00630 at 136.360 kb on + strand at 136.361 kb on - strand at 136.447 kb on + strand at 136.458 kb on + strand at 136.458 kb on + strand at 136.603 kb on + strand, within AO356_00635 at 136.810 kb on + strand, within AO356_00635 at 136.811 kb on - strand, within AO356_00635 at 136.833 kb on - strand, within AO356_00635 at 136.833 kb on - strand, within AO356_00635 at 136.864 kb on + strand at 136.864 kb on + strand at 136.864 kb on + strand at 136.864 kb on + strand at 136.864 kb on + strand at 136.865 kb on - strand at 136.931 kb on - strand at 137.019 kb on + strand at 137.020 kb on - strand at 137.020 kb on - strand at 137.020 kb on - strand at 137.153 kb on + strand, within AO356_00640 at 137.154 kb on - strand, within AO356_00640 at 137.154 kb on - strand, within AO356_00640 at 137.212 kb on + strand, within AO356_00640 at 137.213 kb on - strand, within AO356_00640 at 137.213 kb on - strand, within AO356_00640 at 137.213 kb on - strand, within AO356_00640 at 137.254 kb on + strand, within AO356_00640 at 137.255 kb on - strand, within AO356_00640 at 137.255 kb on - strand, within AO356_00640 at 137.296 kb on + strand, within AO356_00640 at 137.296 kb on + strand, within AO356_00640 at 137.296 kb on + strand, within AO356_00640 at 137.297 kb on - strand, within AO356_00640 at 137.297 kb on - strand, within AO356_00640 at 137.350 kb on + strand, within AO356_00640 at 137.350 kb on + strand, within AO356_00640 at 137.618 kb on - strand at 137.756 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 135,487 + AO356_00630 0.23 -0.6 135,487 + AO356_00630 0.23 -0.1 135,488 - AO356_00630 0.23 -0.3 135,665 - AO356_00630 0.39 -1.9 135,665 - AO356_00630 0.39 +0.2 135,967 + AO356_00630 0.65 -1.1 135,968 - AO356_00630 0.65 +0.7 136,021 + AO356_00630 0.70 +0.5 136,360 + -0.5 136,361 - +0.7 136,447 + -0.3 136,458 + +0.9 136,458 + +0.6 136,603 + AO356_00635 0.36 +0.4 136,810 + AO356_00635 0.83 +0.5 136,811 - AO356_00635 0.83 -0.4 136,833 - AO356_00635 0.88 -0.0 136,833 - AO356_00635 0.88 +1.0 136,864 + +0.9 136,864 + -0.3 136,864 + +0.1 136,864 + -0.2 136,864 + -0.5 136,865 - +0.8 136,931 - +0.2 137,019 + +0.1 137,020 - -0.2 137,020 - +0.6 137,020 - -0.5 137,153 + AO356_00640 0.17 -0.2 137,154 - AO356_00640 0.17 +0.4 137,154 - AO356_00640 0.17 +0.1 137,212 + AO356_00640 0.26 +0.0 137,213 - AO356_00640 0.26 +0.2 137,213 - AO356_00640 0.26 -1.6 137,213 - AO356_00640 0.26 -0.5 137,254 + AO356_00640 0.33 +0.9 137,255 - AO356_00640 0.33 -0.4 137,255 - AO356_00640 0.33 +0.3 137,296 + AO356_00640 0.40 +1.3 137,296 + AO356_00640 0.40 +0.6 137,296 + AO356_00640 0.40 +0.1 137,297 - AO356_00640 0.40 -0.4 137,297 - AO356_00640 0.40 +0.4 137,350 + AO356_00640 0.48 +0.3 137,350 + AO356_00640 0.48 +0.4 137,618 - -1.1 137,756 - -1.5
Or see this region's nucleotide sequence