Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00620 and AO356_00625 are separated by 139 nucleotides AO356_00625 and AO356_00630 are separated by 9 nucleotides
AO356_00620: AO356_00620 - LysR family transcriptional regulator, at 132,882 to 133,820
_00620
AO356_00625: AO356_00625 - (Fe-S)-binding protein, at 133,960 to 135,216
_00625
AO356_00630: AO356_00630 - ferredoxin, at 135,226 to 136,362
_00630
Position (kb) 133
134
135
136 Strain fitness (log2 ratio) -2
-1
0
1 at 133.116 kb on + strand, within AO356_00620 at 133.116 kb on + strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.117 kb on - strand, within AO356_00620 at 133.243 kb on + strand, within AO356_00620 at 133.244 kb on - strand, within AO356_00620 at 133.244 kb on - strand, within AO356_00620 at 133.326 kb on + strand, within AO356_00620 at 133.596 kb on + strand, within AO356_00620 at 133.596 kb on + strand, within AO356_00620 at 133.596 kb on + strand, within AO356_00620 at 133.697 kb on + strand, within AO356_00620 at 133.698 kb on - strand, within AO356_00620 at 133.728 kb on + strand at 133.729 kb on - strand at 133.729 kb on - strand at 133.731 kb on + strand at 133.732 kb on - strand at 133.732 kb on - strand at 133.732 kb on - strand at 133.732 kb on - strand at 134.285 kb on - strand, within AO356_00625 at 134.299 kb on + strand, within AO356_00625 at 134.482 kb on + strand, within AO356_00625 at 134.483 kb on - strand, within AO356_00625 at 134.510 kb on - strand, within AO356_00625 at 134.510 kb on - strand, within AO356_00625 at 134.573 kb on - strand, within AO356_00625 at 134.728 kb on + strand, within AO356_00625 at 134.729 kb on - strand, within AO356_00625 at 134.947 kb on + strand, within AO356_00625 at 134.947 kb on + strand, within AO356_00625 at 135.124 kb on + strand at 135.125 kb on - strand at 135.125 kb on - strand at 135.125 kb on - strand at 135.160 kb on + strand at 135.160 kb on + strand at 135.185 kb on - strand at 135.282 kb on + strand at 135.283 kb on - strand at 135.487 kb on + strand, within AO356_00630 at 135.487 kb on + strand, within AO356_00630 at 135.488 kb on - strand, within AO356_00630 at 135.665 kb on - strand, within AO356_00630 at 135.665 kb on - strand, within AO356_00630 at 135.967 kb on + strand, within AO356_00630 at 135.968 kb on - strand, within AO356_00630 at 136.021 kb on + strand, within AO356_00630
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 133,116 + AO356_00620 0.25 -0.9 133,116 + AO356_00620 0.25 +0.2 133,117 - AO356_00620 0.25 +0.2 133,117 - AO356_00620 0.25 -0.9 133,117 - AO356_00620 0.25 -1.4 133,117 - AO356_00620 0.25 -0.3 133,117 - AO356_00620 0.25 +0.6 133,117 - AO356_00620 0.25 -0.3 133,243 + AO356_00620 0.38 -0.4 133,244 - AO356_00620 0.39 -0.6 133,244 - AO356_00620 0.39 +0.3 133,326 + AO356_00620 0.47 -0.6 133,596 + AO356_00620 0.76 -0.8 133,596 + AO356_00620 0.76 +1.5 133,596 + AO356_00620 0.76 -0.2 133,697 + AO356_00620 0.87 -0.9 133,698 - AO356_00620 0.87 -1.0 133,728 + -1.1 133,729 - +0.5 133,729 - +0.1 133,731 + -1.3 133,732 - -1.3 133,732 - -0.1 133,732 - +0.2 133,732 - -0.6 134,285 - AO356_00625 0.26 -0.0 134,299 + AO356_00625 0.27 +0.6 134,482 + AO356_00625 0.42 +1.3 134,483 - AO356_00625 0.42 +1.1 134,510 - AO356_00625 0.44 -0.8 134,510 - AO356_00625 0.44 +0.1 134,573 - AO356_00625 0.49 +0.9 134,728 + AO356_00625 0.61 +0.1 134,729 - AO356_00625 0.61 -0.3 134,947 + AO356_00625 0.79 -0.3 134,947 + AO356_00625 0.79 -0.8 135,124 + +0.7 135,125 - -0.6 135,125 - +0.3 135,125 - +0.1 135,160 + -0.1 135,160 + +0.5 135,185 - -0.2 135,282 + +0.8 135,283 - +1.2 135,487 + AO356_00630 0.23 -0.6 135,487 + AO356_00630 0.23 -0.1 135,488 - AO356_00630 0.23 -0.3 135,665 - AO356_00630 0.39 -1.9 135,665 - AO356_00630 0.39 +0.2 135,967 + AO356_00630 0.65 -1.1 135,968 - AO356_00630 0.65 +0.7 136,021 + AO356_00630 0.70 +0.5
Or see this region's nucleotide sequence