Experiment: Nalidixic 0.004 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt AO356_00335 and AO356_00340 are separated by 222 nucleotides AO356_00340 and AO356_00345 are separated by 63 nucleotides AO356_00345 and AO356_00350 are separated by 32 nucleotides
AO356_00335: AO356_00335 - integrase, at 65,556 to 67,397
_00335
AO356_00340: AO356_00340 - tRNA-Gly, at 67,620 to 67,695
_00340
AO356_00345: AO356_00345 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 67,759 to 68,319
_00345
AO356_00350: AO356_00350 - excinuclease ABC subunit C, at 68,352 to 70,175
_00350
Position (kb) 67
68 Strain fitness (log2 ratio) -2
-1
0
1
2 at 66.719 kb on - strand, within AO356_00335 at 66.936 kb on + strand, within AO356_00335 at 66.936 kb on + strand, within AO356_00335 at 66.942 kb on + strand, within AO356_00335 at 66.943 kb on - strand, within AO356_00335 at 66.967 kb on + strand, within AO356_00335 at 66.967 kb on + strand, within AO356_00335 at 66.967 kb on + strand, within AO356_00335 at 66.967 kb on + strand, within AO356_00335 at 66.968 kb on - strand, within AO356_00335 at 66.971 kb on + strand, within AO356_00335 at 66.971 kb on + strand, within AO356_00335 at 66.971 kb on + strand, within AO356_00335 at 66.972 kb on - strand, within AO356_00335 at 66.972 kb on - strand, within AO356_00335 at 67.153 kb on + strand, within AO356_00335 at 67.153 kb on + strand, within AO356_00335 at 67.153 kb on + strand, within AO356_00335 at 67.181 kb on + strand, within AO356_00335 at 67.182 kb on - strand, within AO356_00335 at 67.231 kb on + strand at 67.231 kb on + strand at 67.274 kb on - strand at 67.345 kb on + strand at 67.345 kb on + strand at 67.346 kb on - strand at 67.506 kb on + strand at 67.507 kb on - strand at 67.519 kb on + strand at 67.564 kb on - strand at 67.717 kb on + strand at 67.718 kb on - strand at 68.354 kb on - strand at 68.375 kb on - strand at 68.375 kb on - strand at 68.375 kb on - strand at 68.397 kb on - strand at 68.397 kb on - strand at 68.418 kb on + strand at 68.418 kb on + strand at 68.419 kb on - strand at 68.519 kb on + strand at 68.520 kb on - strand at 68.525 kb on + strand at 68.526 kb on - strand at 68.659 kb on + strand, within AO356_00350 at 68.660 kb on - strand, within AO356_00350
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.004 mg/ml remove 66,719 - AO356_00335 0.63 -0.1 66,936 + AO356_00335 0.75 +0.4 66,936 + AO356_00335 0.75 -0.2 66,942 + AO356_00335 0.75 -1.1 66,943 - AO356_00335 0.75 -2.3 66,967 + AO356_00335 0.77 -0.4 66,967 + AO356_00335 0.77 +0.7 66,967 + AO356_00335 0.77 -0.5 66,967 + AO356_00335 0.77 -0.3 66,968 - AO356_00335 0.77 -0.7 66,971 + AO356_00335 0.77 +0.2 66,971 + AO356_00335 0.77 +1.2 66,971 + AO356_00335 0.77 -0.6 66,972 - AO356_00335 0.77 +0.1 66,972 - AO356_00335 0.77 -1.5 67,153 + AO356_00335 0.87 +0.8 67,153 + AO356_00335 0.87 -0.8 67,153 + AO356_00335 0.87 -1.2 67,181 + AO356_00335 0.88 -1.2 67,182 - AO356_00335 0.88 +0.4 67,231 + -1.0 67,231 + -2.2 67,274 - +0.1 67,345 + +0.5 67,345 + -0.4 67,346 - -1.2 67,506 + -0.3 67,507 - +1.6 67,519 + +1.3 67,564 - +0.8 67,717 + +0.0 67,718 - +0.1 68,354 - +0.5 68,375 - +0.1 68,375 - +2.2 68,375 - +0.1 68,397 - -0.2 68,397 - -1.0 68,418 + -0.6 68,418 + +1.1 68,419 - +0.6 68,519 + -1.0 68,520 - -0.3 68,525 + -0.5 68,526 - +0.5 68,659 + AO356_00350 0.17 -0.7 68,660 - AO356_00350 0.17 +0.1
Or see this region's nucleotide sequence