Strain Fitness in Shewanella loihica PV-4 around Shew_3838

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,565,724	+		Shew_3835	0.56	-0.4
4,565,745	+		Shew_3835	0.68	+0.4
4,565,745	+		Shew_3835	0.68	-0.6
4,565,753	-		Shew_3835	0.73	-0.5
4,565,826	+				-0.5
4,565,826	+				+0.1
4,565,826	+				+0.2
4,565,826	+				+0.2
4,565,826	+				-0.6
4,565,834	-				+0.3
4,565,866	-				+0.3
4,566,006	+		Shew_3836	0.41	-0.3
4,566,037	-		Shew_3836	0.50	+0.6
4,566,148	-		Shew_3836	0.81	-0.9
4,566,186	+				-0.1
4,566,186	+				+0.3
4,566,186	+				-0.3
4,566,194	-				+0.4
4,566,194	-				+0.9
4,566,194	-				-1.7
4,566,208	+				-1.1
4,566,208	+				+0.6
4,566,261	-		Shew_3837	0.16	-0.5
4,566,270	+		Shew_3837	0.19	-0.2
4,566,372	+		Shew_3837	0.50	-0.3
4,566,494	+		Shew_3837	0.88	+0.4
4,566,702	-				-0.0
4,566,724	+				-0.1
4,566,747	+				-0.0
4,566,792	-		Shew_3838	0.11	+0.4
4,567,069	-		Shew_3838	0.39	+3.9
4,567,081	+		Shew_3838	0.40	-0.0
4,567,091	+		Shew_3838	0.41	+0.4
4,567,099	-		Shew_3838	0.42	+0.0
4,567,237	+		Shew_3838	0.56	+0.0
4,567,270	+		Shew_3838	0.59	-0.2
4,567,326	-		Shew_3838	0.65	+0.2
4,567,461	-		Shew_3838	0.79	+0.6
4,567,462	-		Shew_3838	0.79	+0.2
4,567,559	+		Shew_3838	0.89	+0.0
4,567,567	-		Shew_3838	0.90	+0.2
4,567,567	-		Shew_3838	0.90	-1.2
4,567,567	-		Shew_3838	0.90	+0.6
4,567,650	+				-0.1
4,567,650	+				-0.4
4,567,650	+				+0.2
4,567,650	+				-0.1
4,567,650	+				-1.1
4,567,658	-				+0.2
4,567,662	+				-0.2
4,567,670	-				+1.1
4,567,670	-				-0.5
4,567,670	-				+0.3
4,567,682	+				+3.3
4,567,688	-				+0.1
4,567,690	-				+0.5
4,567,690	-				+0.2
4,567,692	+				-0.3
4,567,721	+				-0.1
4,567,739	+				-0.5
4,567,747	+				+0.3
4,567,747	+				+0.1
4,567,747	+				+0.4
4,567,747	-				+0.2
4,567,747	+				+0.4
4,567,755	-				-0.5
4,567,755	-				+0.5
4,567,755	-				+0.3
4,567,779	-				-0.1
4,567,806	+				+0.2
4,567,806	+				+0.2
4,567,857	+				-0.9
4,567,865	-				+0.2
4,567,873	+				-0.2
4,567,972	+				+0.2
4,567,972	+				-0.5
4,567,972	+				+0.4
4,567,974	+				+0.2
4,567,980	-				-0.3
4,567,980	-				+0.6
4,567,982	-				+0.2
4,567,982	-				+0.1
4,567,984	-				+0.5
4,567,984	-				+0.0
4,568,081	-				-0.1
4,568,097	+				-0.1
4,568,149	-				+0.1
4,568,149	+				-1.1
4,568,150	-				+0.4
4,568,159	-				-0.5
4,568,178	+				+1.1
4,568,178	+				+0.4
4,568,178	+				+0.2
4,568,186	-				-0.5
4,568,259	+				+0.2
4,568,272	-				-0.5
4,568,298	+				-0.0
4,568,298	+				-0.4
4,568,298	+				+0.2
4,568,316	-				+0.8
4,568,316	-				+0.9
4,568,345	+				-0.3
4,568,353	-				+0.2
4,568,386	+				+0.3
4,568,495	-				-0.3
4,568,501	+				+0.1
4,568,577	-				-0.6