Strain Fitness in Shewanella loihica PV-4 around Shew_3800

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,520,323	+		Shew_3798	0.88	+0.1
4,520,323	+		Shew_3798	0.88	-0.1
4,520,323	+		Shew_3798	0.88	+0.9
4,520,323	+		Shew_3798	0.88	+0.1
4,520,331	-		Shew_3798	0.88	-0.1
4,520,331	-		Shew_3798	0.88	+0.1
4,520,331	-		Shew_3798	0.88	+0.3
4,520,938	-		Shew_3799	0.58	+0.0
4,521,090	+		Shew_3799	0.80	-0.5
4,521,236	+				+0.4
4,521,544	+		Shew_3800	0.23	-0.3
4,521,760	-		Shew_3800	0.42	-0.6
4,521,827	-		Shew_3800	0.48	-0.7
4,521,838	+		Shew_3800	0.49	-0.4
4,521,846	-		Shew_3800	0.50	-0.3
4,521,958	-		Shew_3800	0.60	+0.1
4,521,958	-		Shew_3800	0.60	-0.5
4,521,963	-		Shew_3800	0.61	-0.2
4,521,976	+		Shew_3800	0.62	+0.2
4,522,120	+		Shew_3800	0.75	+0.1
4,522,261	-		Shew_3800	0.88	-0.3
4,522,261	-		Shew_3800	0.88	-0.1
4,522,261	-		Shew_3800	0.88	+0.0
4,522,268	-		Shew_3800	0.88	-0.1
4,522,333	-				-1.2
4,522,505	+				+0.5
4,522,524	-				-1.8
4,522,529	-				+0.3
4,522,557	+				+0.5
4,522,560	-				+0.4
4,522,565	+				-0.1
4,522,616	-				+0.1
4,522,674	-				+0.1
4,522,674	-				+0.5
4,522,687	-				+1.4
4,522,687	-				+0.0
4,522,687	-				-0.0
4,522,687	-				+0.1
4,522,687	-				+0.1
4,522,719	-				+0.5
4,522,722	-				-0.1
4,522,722	+				+0.3
4,522,726	+				-0.1
4,522,726	+				-0.3
4,522,726	+				-0.0
4,522,734	-				+0.4
4,522,734	-				+0.6
4,522,735	+				+0.4
4,522,737	+				+0.3
4,522,737	+				+0.6
4,522,737	+				-0.2
4,522,745	-				+0.3
4,522,745	-				-0.1
4,522,746	+				+0.6
4,522,754	-				+0.1
4,522,767	-				-0.1
4,522,770	-				+0.5
4,522,774	+				+0.4
4,522,774	+				-0.5
4,522,780	-				+0.0
4,522,782	-				+0.2
4,522,798	-				+0.3
4,522,821	+				+0.5
4,522,824	-				-0.9
4,522,882	+				+0.3
4,522,913	+		Shew_3801	0.10	+0.2
4,522,921	-		Shew_3801	0.11	+0.2
4,522,936	-		Shew_3801	0.11	+0.1
4,522,936	-		Shew_3801	0.11	+0.3
4,522,941	-		Shew_3801	0.12	-0.3
4,522,946	-		Shew_3801	0.12	-0.4
4,522,949	-		Shew_3801	0.12	-0.2
4,522,954	+		Shew_3801	0.12	-0.0
4,522,961	-		Shew_3801	0.12	-0.1
4,522,978	-		Shew_3801	0.13	+0.0
4,523,028	+		Shew_3801	0.15	-0.4
4,523,028	+		Shew_3801	0.15	+0.2
4,523,038	+		Shew_3801	0.16	+0.4
4,523,038	+		Shew_3801	0.16	-0.1
4,523,038	+		Shew_3801	0.16	-0.4
4,523,046	-		Shew_3801	0.16	-0.1
4,523,046	-		Shew_3801	0.16	-0.1
4,523,046	-		Shew_3801	0.16	-1.3
4,523,046	-		Shew_3801	0.16	+0.8
4,523,046	-		Shew_3801	0.16	-0.9
4,523,046	-		Shew_3801	0.16	+1.1
4,523,046	-		Shew_3801	0.16	+0.4
4,523,046	-		Shew_3801	0.16	-1.0
4,523,056	-		Shew_3801	0.17	-0.0
4,523,060	-		Shew_3801	0.17	+0.2
4,523,060	-		Shew_3801	0.17	+0.3
4,523,070	-		Shew_3801	0.17	+0.3
4,523,070	-		Shew_3801	0.17	+0.3
4,523,105	+		Shew_3801	0.19	+0.0
4,523,113	-		Shew_3801	0.19	-0.2
4,523,136	-		Shew_3801	0.20	-0.3
4,523,136	-		Shew_3801	0.20	+0.1
4,523,144	-		Shew_3801	0.21	+0.6
4,523,216	+		Shew_3801	0.24	-0.2
4,523,224	-		Shew_3801	0.24	+0.5
4,523,240	+		Shew_3801	0.25	+0.2
4,523,240	+		Shew_3801	0.25	-0.6
4,523,248	-		Shew_3801	0.25	+0.1
4,523,248	-		Shew_3801	0.25	-0.3
4,523,248	-		Shew_3801	0.25	+1.0
4,523,285	+		Shew_3801	0.27	+0.2
4,523,285	+		Shew_3801	0.27	+0.5
4,523,293	-		Shew_3801	0.27	+0.2
4,523,294	-		Shew_3801	0.27	-0.0
4,523,298	+		Shew_3801	0.27	-0.2
4,523,298	+		Shew_3801	0.27	-1.9
4,523,298	+		Shew_3801	0.27	-1.6
4,523,298	+		Shew_3801	0.27	+0.6
4,523,311	+		Shew_3801	0.28	+0.3
4,523,311	+		Shew_3801	0.28	+0.9
4,523,311	+		Shew_3801	0.28	-0.6
4,523,319	-		Shew_3801	0.28	-0.0
4,523,321	+		Shew_3801	0.28	-0.1
4,523,328	-		Shew_3801	0.29	+0.3
4,523,328	-		Shew_3801	0.29	-0.0
4,523,355	+		Shew_3801	0.30	+1.9
4,523,355	+		Shew_3801	0.30	+0.9
4,523,355	+		Shew_3801	0.30	-0.8
4,523,355	+		Shew_3801	0.30	-0.9
4,523,355	+		Shew_3801	0.30	+0.2
4,523,355	+		Shew_3801	0.30	+0.0
4,523,355	+		Shew_3801	0.30	+0.4
4,523,355	+		Shew_3801	0.30	+0.3
4,523,355	+		Shew_3801	0.30	-0.7
4,523,363	-		Shew_3801	0.30	+0.3
4,523,363	-		Shew_3801	0.30	+0.0
4,523,363	-		Shew_3801	0.30	-0.0
4,523,377	+		Shew_3801	0.31	+0.4
4,523,378	+		Shew_3801	0.31	+1.2
4,523,392	-		Shew_3801	0.32	+0.1