Strain Fitness in Shewanella loihica PV-4 around Shew_3683

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,386,930	+		Shew_3682	0.53	+1.1
4,386,979	-		Shew_3682	0.57	+0.2
4,387,421	+		Shew_3682	0.88	+1.7
4,387,429	-		Shew_3682	0.88	+0.8
4,387,893	+				+0.5
4,388,002	-		Shew_3683	0.22	+0.4
4,388,174	+		Shew_3683	0.43	-0.1
4,388,237	+		Shew_3683	0.51	-2.5
4,388,358	-		Shew_3683	0.65	-1.0
4,388,384	-		Shew_3683	0.69	+0.2
4,388,578	-				+0.5
4,388,638	+				-0.2
4,388,654	+				+0.6
4,388,768	+		Shew_3684	0.19	+0.5
4,388,868	-		Shew_3684	0.33	-0.1
4,388,941	+		Shew_3684	0.43	+0.4
4,389,268	-		Shew_3684	0.89	+0.2
4,389,421	-		Shew_3685	0.11	+1.1
4,389,503	-		Shew_3685	0.22	+0.6
4,389,509	+		Shew_3685	0.23	+0.7
4,389,547	+		Shew_3685	0.28	+1.0