Strain Fitness in Shewanella loihica PV-4 around Shew_3676

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,376,878	+		Shew_3675	0.48	-0.4
4,376,942	+		Shew_3675	0.53	+0.6
4,376,996	-		Shew_3675	0.57	-0.2
4,377,081	-		Shew_3675	0.63	-1.1
4,377,219	+		Shew_3675	0.73	-0.4
4,377,219	+		Shew_3675	0.73	+0.0
4,377,227	-		Shew_3675	0.73	-0.2
4,377,817	-				-0.6
4,377,821	-		Shew_3676	0.10	+0.2
4,378,056	-		Shew_3676	0.21	+0.4
4,378,114	+		Shew_3676	0.23	-1.4
4,378,164	+		Shew_3676	0.26	+0.6
4,378,172	-		Shew_3676	0.26	-0.1
4,378,216	-		Shew_3676	0.28	-0.1
4,378,297	+		Shew_3676	0.32	+0.2
4,378,357	+		Shew_3676	0.34	+0.5
4,378,537	+		Shew_3676	0.43	-1.8
4,379,108	-		Shew_3676	0.68	-1.7
4,379,157	-		Shew_3676	0.71	-0.5
4,379,162	+		Shew_3676	0.71	-0.3
4,379,475	-		Shew_3676	0.85	+0.1
4,379,739	+				-0.9
4,379,757	-				-0.2
4,379,954	+				+0.1
4,379,956	+				+0.2
4,379,985	+				+0.1
4,380,213	+				-0.1
4,380,394	+		Shew_3677	0.15	+0.2
4,380,573	+		Shew_3677	0.28	+1.4