Strain Fitness in Shewanella loihica PV-4 around Shew_3654

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,353,297	+		Shew_3652	0.85	+0.7
4,353,297	+		Shew_3652	0.85	+0.0
4,353,297	+		Shew_3652	0.85	+0.3
4,353,297	+		Shew_3652	0.85	+0.1
4,353,297	+		Shew_3652	0.85	+0.5
4,353,360	-				-0.2
4,353,365	-				+0.5
4,353,570	+		Shew_3653	0.33	-0.7
4,353,862	-				-0.3
4,354,303	-				+0.0
4,354,398	+				+0.1
4,354,593	-		Shew_3654	0.21	+0.1
4,354,672	-		Shew_3654	0.26	+0.1
4,354,741	+		Shew_3654	0.30	-0.5
4,354,755	+		Shew_3654	0.31	+0.7
4,354,926	-		Shew_3654	0.42	+0.1
4,354,943	+		Shew_3654	0.43	-0.6
4,354,943	+		Shew_3654	0.43	-0.9
4,354,951	-		Shew_3654	0.43	-0.2
4,355,259	-		Shew_3654	0.62	+0.2
4,355,307	-		Shew_3654	0.65	-0.4
4,355,420	+		Shew_3654	0.72	-0.4
4,355,863	+				+0.1
4,356,013	+				+0.1
4,356,164	-		Shew_3655	0.24	-1.8
4,356,202	-		Shew_3655	0.28	+0.2
4,356,202	-		Shew_3655	0.28	+0.0
4,356,385	-		Shew_3655	0.49	+0.3