Strain Fitness in Shewanella loihica PV-4 around Shew_3646

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,347,358	+				+0.6
4,347,358	+				+0.1
4,347,366	-				+0.9
4,347,366	-				+1.1
4,347,366	-				+0.1
4,347,366	-				+0.2
4,347,366	-				-0.4
4,347,366	-				-0.4
4,347,366	-				-0.5
4,347,382	+				+0.7
4,347,382	+				-1.1
4,347,390	-				-0.3
4,347,390	-				+0.1
4,347,390	-				-0.9
4,347,390	-				-0.0
4,347,390	-				-0.2
4,347,390	-				-0.2
4,347,390	-				-0.3
4,347,392	+				-0.2
4,347,393	+				+0.1
4,347,400	-				+0.1
4,347,400	-				-0.1
4,347,400	-				+0.5
4,347,401	-				+0.1
4,347,402	-				-0.2
4,347,404	+				-0.2
4,347,404	+				+0.5
4,347,404	+				-0.0
4,347,412	-				+0.5
4,347,412	-				-0.8
4,347,412	-				-1.3
4,347,416	+				-0.5
4,347,423	-				+0.6
4,347,424	-				-1.2
4,347,426	+				+0.3
4,347,426	+				+0.5
4,347,434	-				+0.2
4,347,450	+				+0.3
4,347,450	+				+0.7
4,347,450	+				-0.1
4,347,458	-				+0.2
4,347,482	-				+0.5
4,347,483	+				-0.2
4,347,496	+				+0.8
4,347,497	+				-0.4
4,347,499	-				-0.1
4,347,501	+				+0.6
4,347,504	-				-0.2
4,347,505	-				+0.2
4,347,505	-				+0.1
4,347,505	-				-0.0
4,347,505	-				+0.6
4,347,528	-				+0.1
4,347,533	+				+0.0
4,347,538	+				-0.0
4,347,541	+				+0.0
4,347,541	-				+0.3
4,347,541	-				+0.5
4,347,546	-				+0.2
4,347,554	+				+0.0
4,347,554	+				+0.5
4,347,555	+				+0.3
4,347,555	+				+0.5
4,347,555	+				-0.3
4,347,555	+				+0.5
4,347,555	+				-0.4
4,347,555	+				+0.8
4,347,555	+				+0.2
4,347,555	+				+0.5
4,347,555	+				+0.4
4,347,555	+				+0.0
4,347,555	+				+1.2
4,347,555	+				+0.1
4,347,555	+				+0.0
4,347,555	+				-0.0
4,347,555	+				+0.8
4,347,555	+				+0.8
4,347,555	+				+0.5
4,347,560	+				+0.5
4,347,560	+				+1.0
4,347,560	+				-0.0
4,347,560	+				+0.4
4,347,560	+				-1.6
4,347,560	+				-0.2
4,347,563	-				+0.4
4,347,563	-				+1.0
4,347,563	-				-0.4
4,347,563	-				+0.6
4,347,563	-				-0.1
4,347,563	-				+0.1
4,347,563	-				-0.4
4,347,563	-				-0.4
4,347,563	-				+0.0
4,347,563	-				-0.3
4,347,563	-				+0.1
4,347,565	+				+0.1
4,347,565	+				+0.1
4,347,565	+				+1.1
4,347,565	+				+0.1
4,347,565	+				+0.1
4,347,565	+				+0.3
4,347,565	+				+0.7
4,347,565	+				-0.0
4,347,565	+				+0.0
4,347,565	+				+0.5
4,347,565	+				-0.9
4,347,565	+				+0.5
4,347,566	+				-0.5
4,347,566	+				+0.6
4,347,568	-				-0.3
4,347,568	-				+0.2
4,347,573	-				+0.3
4,347,573	-				-0.7
4,347,573	-				+0.5
4,347,573	-				+0.1
4,347,573	-				-0.0
4,347,573	-				+0.1
4,347,573	-				-0.3
4,347,574	+				-0.3
4,347,580	-				+0.5
4,347,581	+				-0.3
4,347,581	+				-0.1
4,347,581	+				+0.3
4,347,581	+				+0.3
4,347,589	-				+0.2
4,347,589	-				-1.3
4,347,589	-				-0.1
4,347,589	-				+0.3
4,347,600	+				+1.1
4,347,611	+				-0.1
4,347,614	+				+0.2
4,347,614	+				-0.2
4,347,614	+				+0.1
4,347,614	+				-0.0
4,347,617	-				+0.8
4,347,617	-				+0.0
4,347,617	-				+0.3
4,347,619	-				-0.0
4,347,619	-				+0.4
4,347,622	-				+0.1
4,347,622	-				+0.1
4,347,622	-				+0.0
4,347,622	-				-0.3
4,347,623	-				+0.8
4,347,641	+				+0.2
4,347,664	+				+0.1
4,347,672	-				-0.4
4,347,672	-				+0.1
4,347,689	+				+0.3
4,347,689	+				+4.1
4,347,689	+				+0.5
4,347,693	+				-0.0
4,347,696	+				+1.3
4,347,697	-				+0.3
4,347,697	-				+0.4
4,347,697	-				-0.5
4,347,697	-				-0.3
4,347,697	-				-0.1
4,347,697	-				+0.2
4,347,699	+				+0.1
4,347,702	-				+1.7
4,347,704	+				-0.3
4,347,706	+				-0.1
4,347,707	-				-0.1
4,347,711	+				-0.5
4,347,714	-				+0.7
4,347,714	-				+0.3
4,347,714	-				+0.1
4,347,714	-				+0.0
4,347,714	-				-0.1
4,347,722	-				-2.2
4,347,731	+				-2.6
4,347,731	+				+0.3
4,347,731	+				+0.1
4,347,739	-				+0.1
4,347,741	-				-0.3
4,347,745	+				+0.3
4,347,745	+				+0.6
4,347,745	+				-0.0
4,347,753	-				-0.1
4,347,753	-				-0.4
4,347,753	-				+0.4
4,347,753	-				+0.1
4,347,753	-				-0.4
4,347,753	-				+0.3
4,347,753	-				+0.0
4,347,753	-				+0.1
4,347,753	-				+0.2
4,347,757	+				-1.0
4,347,757	+				-0.0
4,347,757	+				+0.0
4,347,757	+				+0.1
4,347,757	+				+0.3
4,347,765	-				-0.3
4,347,765	-				+0.3
4,347,765	-				-0.1
4,347,765	-				+0.1
4,347,785	+				+0.1
4,347,785	+				-0.1
4,347,794	-				+0.1
4,347,803	+				-0.0
4,347,803	+				+0.4
4,347,804	+				+0.3
4,347,809	+				-0.1
4,347,810	-				+0.2
4,347,813	+				-2.4
4,347,813	+				+0.1
4,347,813	+				+0.2
4,347,813	-				+0.5
4,347,813	+				+0.7
4,347,813	+				-0.6
4,347,813	+				+0.1
4,347,813	+				-0.2
4,347,813	+				-0.2
4,347,813	+				-0.2
4,347,813	+				-0.9
4,347,813	+				+0.9
4,347,813	+				-0.3
4,347,813	+				-0.1
4,347,821	-				+0.5
4,347,821	-				+0.1
4,347,821	-				-2.8
4,347,821	-				-0.3
4,347,821	-				+0.2
4,347,821	-				-0.2
4,347,821	-				+0.6
4,347,823	+				+0.5
4,347,823	+				+0.7
4,347,823	+				+0.5
4,347,823	+				+0.2
4,347,823	+				+0.4
4,347,823	+				+0.2
4,347,830	+				-0.1
4,347,830	+				+0.8
4,347,831	-				+0.3
4,347,838	-				+0.1
4,347,838	-				+0.2
4,347,838	-				+0.4
4,347,838	-				-0.2
4,347,838	-				-1.3
4,347,838	-				-0.0
4,347,838	-				+0.0
4,347,838	-				-0.0
4,347,838	-				+1.7
4,347,838	-				-0.1
4,347,841	-				+0.2
4,347,841	-				-0.2
4,347,845	+				-2.1
4,347,853	+				-0.5
4,347,858	+				-1.7
4,347,866	-				+0.4
4,347,866	-				-0.2
4,347,866	-				+0.4
4,347,866	-				+0.1
4,347,866	-				+0.1
4,347,866	-				-0.8
4,347,866	-				+0.1
4,347,866	-				+0.1
4,347,881	+				-0.3
4,347,881	+				-0.2
4,347,889	-				-0.5
4,347,895	+				-0.4
4,347,903	-				-0.6
4,347,905	+				-0.4
4,347,905	+				-1.0
4,347,913	-				-0.1
4,347,913	-				-0.2
4,347,923	-				+0.2
4,347,923	-				+0.3
4,347,926	-				+0.9
4,347,935	-				+0.2
4,347,937	-				+0.5
4,347,954	+				+0.2
4,347,994	+				+0.8
4,347,994	+				+0.6
4,347,994	+				-1.0
4,347,994	+				-0.2
4,347,994	+				-0.4
4,347,994	+				+0.1
4,347,994	+				+0.8
4,348,002	-				-1.9
4,348,002	+				+0.0
4,348,013	+				+0.1
4,348,015	+				-0.2
4,348,024	+				+0.7
4,348,024	+				+0.1
4,348,024	+				+4.5
4,348,024	+				-0.2
4,348,025	-				-0.1
4,348,029	+				-0.0
4,348,029	+				+0.3
4,348,029	+				+0.1
4,348,032	-				-0.0
4,348,032	-				+0.4
4,348,032	-				-0.7
4,348,037	-				-1.1
4,348,037	-				+0.0
4,348,037	-				+0.1
4,348,040	+				-0.1
4,348,048	-				+0.4
4,348,048	-				-0.8
4,348,048	-				-1.1
4,348,048	-				-0.1
4,348,050	+				+0.1
4,348,050	+				-0.3
4,348,056	+				-0.5
4,348,056	+				-0.9
4,348,056	+				+0.1
4,348,058	+				+1.1
4,348,059	+				+0.1
4,348,059	+				-1.0
4,348,064	-				+0.5
4,348,090	-				+0.4
4,348,101	-				-0.5
4,348,102	-				-0.8
4,348,104	-				-0.1
4,348,122	-				-2.4
4,348,127	-				+0.2
4,348,127	-				+1.7
4,348,135	-				+0.1
4,348,150	+				-0.0
4,348,150	+				-0.3
4,348,150	+				-0.2
4,348,150	+				+0.8
4,348,150	+				+0.5
4,348,150	+				+0.0
4,348,150	+				-0.2
4,348,150	+				-0.5
4,348,150	+				-1.3
4,348,150	+				-1.2
4,348,150	+				-0.1
4,348,150	+				+0.9
4,348,150	+				-0.1
4,348,150	+				+0.4
4,348,150	+				+0.5
4,348,150	+				+0.4
4,348,150	+				+0.9
4,348,150	+				-0.1
4,348,150	+				+0.3
4,348,150	+				-0.2
4,348,150	+				-0.9
4,348,150	+				+0.3
4,348,150	+				+0.2
4,348,150	+				-0.6
4,348,150	+				-0.4
4,348,150	+				-0.9
4,348,150	+				+0.8
4,348,150	+				+0.8
4,348,150	+				-1.5
4,348,150	+				-0.3
4,348,150	+				-0.0
4,348,150	+				+0.4
4,348,150	+				+0.5
4,348,150	+				+0.1
4,348,155	+				-0.1
4,348,158	-				+0.4
4,348,158	-				-0.3
4,348,158	-				+0.1
4,348,158	-				+0.3
4,348,158	-				+0.2
4,348,158	-				+0.7
4,348,158	-				+0.1
4,348,158	-				-0.9
4,348,158	-				+1.4
4,348,158	-				-1.1
4,348,158	-				+0.3
4,348,158	-				+0.4
4,348,158	-				+0.3
4,348,158	-				+2.2
4,348,158	-				-0.4
4,348,158	-				+0.1
4,348,158	-				+0.3
4,348,158	-				-0.0
4,348,158	-				-0.5
4,348,158	-				-1.7
4,348,158	-				+0.4
4,348,158	-				+0.1
4,348,158	-				-0.1
4,348,158	-				+0.7
4,348,158	-				+0.1
4,348,158	-				-0.1
4,348,158	-				+0.1
4,348,158	-				+0.2
4,348,158	-				+0.9
4,348,158	-				-0.5
4,348,158	-				+0.7
4,348,158	-				-0.6
4,348,158	-				-0.7
4,348,158	-				+0.7
4,348,167	-				+0.4
4,348,168	-				-1.5
4,348,169	+				+0.2
4,348,177	-				+0.3
4,348,177	-				+0.6
4,348,177	-				-0.6
4,348,184	-				+0.7
4,348,195	+				+0.1
4,348,197	-				-0.1
4,348,203	-				+0.4
4,348,203	-				-0.3
4,348,205	+				+0.2
4,348,205	+				-0.0
4,348,205	+				+0.3
4,348,205	+				-0.1
4,348,205	+				-0.8
4,348,205	+				+0.5
4,348,205	+				+0.4
4,348,205	+				+0.3
4,348,205	+				-0.3
4,348,205	+				+0.1
4,348,212	+				+0.3
4,348,213	-				-0.0
4,348,213	-				-0.6
4,348,213	-				-0.2
4,348,213	-				-0.1
4,348,213	-				+0.1
4,348,213	-				+0.3
4,348,213	-				+0.3
4,348,213	-				+0.3
4,348,213	-				+0.2
4,348,213	-				+0.5
4,348,213	-				+0.5
4,348,213	-				+0.4
4,348,213	-				+0.6
4,348,214	+				+0.3
4,348,217	+				-0.0
4,348,217	+				+0.4
4,348,218	-				-3.6
4,348,220	-				-0.5
4,348,222	-				-0.2
4,348,225	-				+0.1
4,348,225	-				-0.2
4,348,226	+				+0.2
4,348,226	+				+0.3
4,348,226	+				+0.3
4,348,226	+				+0.1
4,348,226	+				-0.1
4,348,226	+				+0.4
4,348,226	+				+0.2
4,348,226	+				+0.5
4,348,226	+				+0.2
4,348,226	+				+0.6
4,348,226	+				+0.4
4,348,226	+				-0.3
4,348,227	-				+0.2
4,348,229	-				+1.1
4,348,231	+				+0.0
4,348,231	+				+0.5
4,348,231	+				+0.1
4,348,234	-				+0.0
4,348,234	-				-1.9
4,348,234	-				+0.7
4,348,234	-				-0.6
4,348,234	-				+0.2
4,348,234	-				-0.0
4,348,234	-				-0.7
4,348,234	-				-0.6
4,348,234	-				-0.3
4,348,234	-				-0.0
4,348,239	-				-0.7
4,348,239	-				+0.2
4,348,239	-				+0.6
4,348,239	-				+0.0
4,348,264	+				+0.8
4,348,274	+				+0.2
4,348,274	+				+0.8
4,348,274	+				+0.4
4,348,274	+				+0.8
4,348,274	+				-0.2
4,348,274	+				+0.5
4,348,274	+				-0.1
4,348,282	-				-0.0
4,348,282	-				+0.4
4,348,282	-				+0.0
4,348,282	-				+0.5
4,348,282	-				-0.5
4,348,282	-				+0.1
4,348,282	-				+0.1
4,348,282	-				-0.4
4,348,282	-				-0.2
4,348,286	+				+0.3
4,348,289	-				+0.2
4,348,294	-				-0.7
4,348,328	+				+0.7
4,348,330	+				-0.0
4,348,331	-				-0.1
4,348,335	-				-0.5
4,348,336	-				-0.0
4,348,336	-				+0.2
4,348,338	-				-0.1
4,348,400	+		Shew_3646	0.14	+0.2
4,348,408	-		Shew_3646	0.17	+0.1
4,348,442	+		Shew_3646	0.26	-0.9
4,348,446	-		Shew_3646	0.27	-0.2
4,348,452	+		Shew_3646	0.29	+0.2
4,348,475	+		Shew_3646	0.36	-1.0
4,348,475	+		Shew_3646	0.36	+0.3
4,348,475	+		Shew_3646	0.36	-1.2
4,348,488	-		Shew_3646	0.39	+0.5
4,348,488	+		Shew_3646	0.39	-0.6
4,348,496	-		Shew_3646	0.42	+0.1
4,348,498	+		Shew_3646	0.42	-1.1
4,348,498	+		Shew_3646	0.42	+0.2
4,348,498	+		Shew_3646	0.42	+0.3
4,348,498	+		Shew_3646	0.42	-0.7
4,348,498	+		Shew_3646	0.42	+0.3
4,348,506	-		Shew_3646	0.44	-0.0
4,348,506	-		Shew_3646	0.44	-2.7
4,348,506	+		Shew_3646	0.44	-1.3
4,348,506	-		Shew_3646	0.44	+0.7
4,348,506	+		Shew_3646	0.44	-0.2
4,348,506	-		Shew_3646	0.44	+0.6
4,348,506	-		Shew_3646	0.44	+0.2
4,348,506	+		Shew_3646	0.44	+0.0
4,348,513	+		Shew_3646	0.46	+0.0
4,348,521	-		Shew_3646	0.49	-0.0
4,348,531	-		Shew_3646	0.52	+0.5
4,348,543	-		Shew_3646	0.55	-0.4
4,348,551	-		Shew_3646	0.57	-0.2
4,348,551	-		Shew_3646	0.57	+0.3
4,348,551	-		Shew_3646	0.57	-0.7
4,348,554	+		Shew_3646	0.58	-0.2
4,348,562	-		Shew_3646	0.60	-0.7
4,348,566	+		Shew_3646	0.62	+0.1
4,348,586	+		Shew_3646	0.67	+0.2
4,348,588	+		Shew_3646	0.68	-0.8
4,348,589	-		Shew_3646	0.68	-0.1
4,348,597	-		Shew_3646	0.70	-0.4
4,348,624	+		Shew_3646	0.78	+0.2
4,348,624	+		Shew_3646	0.78	+0.2
4,348,645	+		Shew_3646	0.84	-0.4
4,348,650	+		Shew_3646	0.85	+0.3
4,348,663	-		Shew_3646	0.89	-0.3
4,348,703	+				+0.2
4,348,711	-				-0.4
4,348,713	+				-0.0
4,348,713	+				-0.5
4,348,713	+				+0.2
4,348,721	-				-0.6
4,348,721	-				+0.1
4,348,726	+				-0.5
4,348,739	+				-0.0
4,348,747	-				+0.8
4,348,751	+				-0.0
4,348,759	-				-0.2
4,348,759	-				+0.1
4,348,769	-				-0.9
4,348,775	+				-0.0
4,348,780	+				+0.2
4,348,781	+				+0.0
4,348,781	+				-0.7
4,348,781	+				+0.4
4,348,782	+				-0.1
4,348,789	-				-0.6
4,348,789	-				+0.4
4,348,789	-				+0.0
4,348,790	-				+0.0
4,348,790	-				-1.9
4,348,811	+				-0.2
4,348,814	-				+0.2
4,348,829	+				+0.6
4,348,865	+				-0.1
4,348,873	-				-0.7
4,348,914	-				-0.9
4,348,940	+				-0.0
4,348,945	-				-0.2
4,349,100	-		Shew_3647	0.29	-2.6
4,349,230	+		Shew_3647	0.46	+0.5
4,349,230	+		Shew_3647	0.46	-0.6
4,349,253	+		Shew_3647	0.49	-0.7
4,349,380	+		Shew_3647	0.65	+0.2
4,349,482	+		Shew_3647	0.78	+0.5
4,349,532	+		Shew_3647	0.84	-1.1