Strain Fitness in Shewanella loihica PV-4 around Shew_3392

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,040,113	+				+0.5
4,040,121	-				-0.4
4,040,151	-				-1.3
4,040,248	-				+0.7
4,040,387	-				+0.4
4,040,605	+				-0.1
4,040,605	+				+0.7
4,041,181	+		Shew_3392	0.24	+0.7
4,041,440	+		Shew_3392	0.47	+0.6
4,041,617	+		Shew_3392	0.62	+0.4
4,041,728	-		Shew_3392	0.71	+0.5
4,041,991	-				+0.1
4,042,314	+				+0.1
4,042,314	+				+0.3
4,042,338	+		Shew_3393	0.10	+0.2
4,042,356	-		Shew_3393	0.14	-1.3
4,042,365	-		Shew_3393	0.16	+0.7
4,042,407	-		Shew_3393	0.25	-0.4
4,042,467	+		Shew_3393	0.38	+0.2
4,042,502	+		Shew_3393	0.46	+0.8
4,042,617	+		Shew_3393	0.71	-0.4
4,042,765	+				+0.4
4,042,773	-				-1.9
4,042,783	-				-0.1
4,042,805	-				-0.8