Strain Fitness in Shewanella loihica PV-4 around Shew_3359

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
4,008,328	+		Shew_3358	0.52	+0.1
4,008,605	+		Shew_3358	0.74	+0.3
4,008,675	+		Shew_3358	0.80	-0.5
4,008,680	+		Shew_3358	0.80	+0.7
4,008,740	-		Shew_3358	0.85	-0.3
4,008,956	+				-0.1
4,009,048	+				-0.2
4,009,422	+		Shew_3359	0.63	+0.7
4,009,775	+		Shew_3360	0.30	+0.1
4,009,775	+		Shew_3360	0.30	+0.1
4,009,783	-		Shew_3360	0.34	-0.2
4,009,783	-		Shew_3360	0.34	+0.1
4,009,864	-		Shew_3360	0.79	+0.1
4,009,866	+		Shew_3360	0.80	+1.2
4,009,984	-				+0.3
4,010,012	-		Shew_3361	0.16	+0.3
4,010,055	-		Shew_3361	0.27	+0.5
4,010,403	+				+0.0