Strain Fitness in Shewanella loihica PV-4 around Shew_3334

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,976,971	+		Shew_3332	0.44	-0.5
3,977,059	-		Shew_3332	0.64	-0.3
3,977,129	+		Shew_3332	0.79	+0.1
3,977,250	-				-0.3
3,977,262	-				-0.1
3,977,379	-		Shew_3333	0.21	-0.3
3,977,419	-		Shew_3333	0.27	-0.2
3,977,452	+		Shew_3333	0.33	-0.1
3,977,452	+		Shew_3333	0.33	+0.0
3,977,452	+		Shew_3333	0.33	-0.1
3,977,452	+		Shew_3333	0.33	-0.6
3,977,452	+		Shew_3333	0.33	-0.3
3,977,460	-		Shew_3333	0.34	-0.1
3,977,460	-		Shew_3333	0.34	-0.4
3,977,460	-		Shew_3333	0.34	+0.0
3,977,867	+				-0.2
3,977,952	+				-0.2
3,977,970	-				-0.0
3,978,131	+		Shew_3334	0.28	+0.2
3,978,190	-		Shew_3334	0.35	-0.7
3,978,262	-		Shew_3334	0.43	-0.3
3,978,387	+		Shew_3334	0.58	-0.3
3,978,451	-		Shew_3334	0.66	+0.3
3,978,820	-				-0.4
3,978,925	-				+0.5
3,978,991	-		Shew_3335	0.13	-0.7
3,978,996	-		Shew_3335	0.14	-0.4
3,979,242	+		Shew_3335	0.35	+0.1
3,979,284	-		Shew_3335	0.38	-0.3
3,979,531	-		Shew_3335	0.59	-0.1
3,979,612	+		Shew_3335	0.66	-0.4
3,979,667	-		Shew_3335	0.71	-0.9