Strain Fitness in Shewanella loihica PV-4 around Shew_3156

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,756,649	-				+0.1
3,756,675	+				+0.5
3,756,680	+				+0.1
3,756,690	+				-0.0
3,756,698	-				+0.6
3,756,935	+				-1.1
3,757,024	+				-0.4
3,757,024	+				+0.2
3,757,024	+				+0.3
3,757,024	+				-0.1
3,757,024	+				+0.6
3,757,032	-				-0.0
3,757,032	-				-0.0
3,757,032	-				+1.1
3,757,032	-				+0.5
3,757,036	+				+0.3
3,757,036	+				+0.2
3,757,036	+				+0.2
3,757,036	+				+0.0
3,757,036	+				+0.2
3,757,039	+				-0.1
3,757,044	-				+0.4
3,757,049	-				-0.6
3,757,060	+				+0.3
3,757,060	+				+0.3
3,757,060	+				+0.2
3,757,060	+				+0.1
3,757,060	+				+0.7
3,757,068	-				+0.5
3,757,068	-				-0.1
3,757,068	-				+0.5
3,757,095	-		Shew_3155	0.11	+0.4
3,757,114	+		Shew_3155	0.15	+0.2
3,757,121	+		Shew_3155	0.16	-0.1
3,757,122	-		Shew_3155	0.16	-0.1
3,757,134	-		Shew_3155	0.19	+0.4
3,757,143	-		Shew_3155	0.20	+0.6
3,757,154	-		Shew_3155	0.23	-0.2
3,757,193	+		Shew_3155	0.30	+0.3
3,757,193	+		Shew_3155	0.30	+0.2
3,757,243	-		Shew_3155	0.40	+0.4
3,757,269	+		Shew_3155	0.45	+0.6
3,757,277	-		Shew_3155	0.47	+0.6
3,757,323	+		Shew_3155	0.56	+0.4
3,757,333	+		Shew_3155	0.58	-0.2
3,757,435	-		Shew_3155	0.78	+0.8
3,757,519	+				+0.4
3,757,613	-				-1.1
3,757,878	+		Shew_3156	0.50	-0.6
3,758,040	+		Shew_3156	0.85	-0.8
3,758,056	-		Shew_3156	0.88	-0.4
3,758,228	-		Shew_3157	0.15	+0.5
3,758,416	+		Shew_3157	0.42	-1.6
3,758,439	-		Shew_3157	0.46	-0.5
3,758,441	+		Shew_3157	0.46	+0.4
3,758,441	+		Shew_3157	0.46	+0.3
3,758,441	+		Shew_3157	0.46	-1.2
3,758,441	+		Shew_3157	0.46	-0.8
3,758,441	+		Shew_3157	0.46	-0.6
3,758,441	+		Shew_3157	0.46	+0.2
3,758,441	+		Shew_3157	0.46	-1.3
3,758,441	+		Shew_3157	0.46	-0.7
3,758,449	-		Shew_3157	0.47	+0.1
3,758,449	-		Shew_3157	0.47	-0.1
3,758,449	-		Shew_3157	0.47	+1.4
3,758,561	+		Shew_3157	0.63	-0.9
3,758,569	-		Shew_3157	0.65	+0.2
3,758,631	-		Shew_3157	0.73	+0.5
3,758,631	+		Shew_3157	0.73	+0.3
3,758,676	-		Shew_3157	0.80	-0.2