Strain Fitness in Shewanella loihica PV-4 around Shew_2980

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,534,478	-		Shew_2979	0.53	-0.1
3,534,595	+		Shew_2979	0.63	+0.1
3,534,649	-		Shew_2979	0.67	+0.3
3,535,012	+				-0.7
3,535,301	-		Shew_2980	0.31	-0.4
3,535,301	-		Shew_2980	0.31	-1.0
3,535,329	-		Shew_2980	0.45	-0.6
3,535,431	-				-0.7
3,535,481	-				+0.1
3,535,552	-				+0.6
3,535,698	+				-0.0
3,535,985	-		Shew_2981	0.21	+0.1
3,536,144	-		Shew_2981	0.29	-0.0
3,536,246	+		Shew_2981	0.35	-0.1