Strain Fitness in Shewanella loihica PV-4 around Shew_2889

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,427,544	+		Shew_2888	0.32	-0.0
3,427,777	-		Shew_2888	0.54	-0.1
3,427,801	+		Shew_2888	0.56	+0.0
3,428,154	+		Shew_2888	0.89	-1.1
3,428,237	-				+0.0
3,428,521	+				-0.1
3,428,579	+		Shew_2889	0.20	-0.5
3,428,677	+		Shew_2889	0.37	+0.8
3,428,688	-		Shew_2889	0.39	+2.7
3,428,899	-		Shew_2889	0.76	+1.2
3,429,474	-		Shew_2890	0.72	+0.3
3,429,475	-		Shew_2890	0.72	+0.3
3,429,935	+		Shew_2891	0.34	+0.7
3,429,935	+		Shew_2891	0.34	-0.8
3,429,935	+		Shew_2891	0.34	+0.2
3,429,943	-		Shew_2891	0.36	-0.2
3,429,943	-		Shew_2891	0.36	+1.0
3,429,943	-		Shew_2891	0.36	-0.4
3,429,943	-		Shew_2891	0.36	+0.2
3,429,943	-		Shew_2891	0.36	+0.6