Strain Fitness in Shewanella loihica PV-4 around Shew_2873

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2871 and Shew_2872 are separated by 167 nucleotidesShew_2872 and Shew_2873 are separated by 10 nucleotidesShew_2873 and Shew_2874 are separated by 285 nucleotidesShew_2874 and Shew_2875 are separated by 167 nucleotides Shew_2871: Shew_2871 - DNA polymerase IV (RefSeq), at 3,411,830 to 3,412,909 _2871 Shew_2872: Shew_2872 - bacterioferritin (RefSeq), at 3,413,077 to 3,413,544 _2872 Shew_2873: Shew_2873 - bacterioferritin (RefSeq), at 3,413,555 to 3,414,028 _2873 Shew_2874: Shew_2874 - hypothetical protein (RefSeq), at 3,414,314 to 3,414,538 _2874 Shew_2875: Shew_2875 - ApbE family lipoprotein (RefSeq), at 3,414,706 to 3,415,722 _2875 Position (kb) 3413 3414 3415Strain fitness (log2 ratio) -1 0 1at 3412.744 kb on - strand, within Shew_2871at 3412.841 kb on - strandat 3413.011 kb on + strandat 3414.219 kb on - strandat 3414.642 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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3,412,744 - Shew_2871 0.85 -0.2
3,412,841 - +0.0
3,413,011 + +0.4
3,414,219 - -0.8
3,414,642 - -1.5

Or see this region's nucleotide sequence