Strain Fitness in Shewanella loihica PV-4 around Shew_2867

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,399,977	-		Shew_2866	0.63	+0.4
3,400,176	+		Shew_2866	0.75	-0.7
3,400,176	+		Shew_2866	0.75	+0.2
3,400,176	+		Shew_2866	0.75	+0.3
3,400,184	-		Shew_2866	0.75	-0.3
3,400,184	-		Shew_2866	0.75	-0.3
3,400,186	+		Shew_2866	0.75	-0.8
3,400,666	+				-0.2
3,400,666	+				-0.6
3,400,674	-				-0.6
3,400,676	+				+0.5
3,400,818	+				+1.4
3,401,035	-		Shew_2867	0.13	+0.2
3,401,143	-		Shew_2867	0.16	+0.7
3,401,171	-		Shew_2867	0.17	+0.3
3,401,290	-		Shew_2867	0.21	+0.3
3,401,305	-		Shew_2867	0.21	-0.5
3,401,645	+		Shew_2867	0.32	-1.2
3,401,720	+		Shew_2867	0.34	-0.2
3,401,763	-		Shew_2867	0.35	-0.0
3,401,825	-		Shew_2867	0.37	-0.2
3,401,911	-		Shew_2867	0.40	-0.7
3,402,886	+		Shew_2867	0.69	-0.4
3,403,382	-		Shew_2867	0.85	-0.3
3,403,513	-		Shew_2867	0.88	-0.3
3,403,546	-		Shew_2867	0.89	-0.5
3,403,674	+				+0.0
3,403,934	+				+0.2
3,403,942	-				+0.2
3,404,079	+				-0.3
3,404,079	+				-0.7
3,404,394	+				+0.2
3,404,394	+				+0.4
3,404,402	-				+0.3
3,404,402	-				-0.4
3,404,402	-				+0.1
3,404,708	+		Shew_2868	0.16	-0.0
3,404,727	-		Shew_2868	0.17	+0.2
3,404,825	+		Shew_2868	0.23	-1.0