Strain Fitness in Shewanella loihica PV-4 around Shew_2799

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,314,079	-		Shew_2798	0.63	-0.2
3,314,893	+				-0.9
3,314,901	-				+0.2
3,314,904	+				-0.0
3,314,927	-				+0.0
3,314,927	-				-0.6
3,315,139	-	torD	Shew_2799	0.16	+0.4
3,315,402	+	torD	Shew_2799	0.57	-1.1
3,315,593	+	torD	Shew_2799	0.87	-0.6
3,315,812	+		Shew_2800	0.10	-0.1
3,315,858	-		Shew_2800	0.14	-0.6
3,315,938	+		Shew_2800	0.21	+0.7
3,315,956	-		Shew_2800	0.22	-0.3
3,316,058	-		Shew_2800	0.30	-0.3
3,316,256	-		Shew_2800	0.47	-0.4
3,316,487	+		Shew_2800	0.65	+0.1
3,316,588	-		Shew_2800	0.74	-0.5