Strain Fitness in Shewanella loihica PV-4 around Shew_2608

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
3,073,733	+		Shew_2607	0.57	-0.0
3,073,754	+		Shew_2607	0.59	-0.3
3,073,853	-		Shew_2607	0.67	+0.3
3,074,176	-				+0.4
3,074,243	+				-0.1
3,074,383	+				-0.1
3,074,413	-				-0.2
3,074,413	-				-1.8
3,074,423	+				-0.0
3,074,518	-		Shew_2608	0.12	-0.8
3,074,545	+		Shew_2608	0.14	-3.3
3,074,718	-		Shew_2608	0.30	-1.9
3,075,007	-		Shew_2608	0.57	-0.2
3,075,344	+		Shew_2608	0.89	-0.2
3,075,421	-				-0.6
3,075,524	+				+0.4
3,075,611	+				+0.2
3,075,763	+		Shew_2609	0.27	-0.4
3,076,118	-		Shew_2609	0.66	+0.3
3,076,343	+				+0.1