Strain Fitness in Shewanella loihica PV-4 around Shew_2296

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
2,684,834	+		Shew_2295	0.42	+0.2
2,684,842	-		Shew_2295	0.43	-0.1
2,684,842	-		Shew_2295	0.43	-0.6
2,684,842	-		Shew_2295	0.43	+0.2
2,684,847	+		Shew_2295	0.43	+0.2
2,684,969	+		Shew_2295	0.57	+0.2
2,684,969	+		Shew_2295	0.57	+0.5
2,684,977	-		Shew_2295	0.58	-0.0
2,684,977	-		Shew_2295	0.58	-0.3
2,684,977	-		Shew_2295	0.58	+0.3
2,685,231	+		Shew_2295	0.87	+0.1
2,685,244	+		Shew_2295	0.88	+0.5
2,685,253	-		Shew_2295	0.89	+0.4
2,685,347	+				-3.4
2,685,355	-				+1.0
2,685,355	-				+0.1
2,685,365	-				-0.4
2,685,453	+				-0.5
2,685,671	-				+0.0
2,685,709	+				+0.3
2,685,709	+				+1.1
2,685,709	+				+0.1
2,685,709	+				-0.1
2,685,709	+				-0.2
2,685,709	+				+0.3
2,685,714	+				-0.3
2,685,717	-				+0.7
2,685,722	-				+0.3
2,685,722	-				+1.2
2,685,737	+				+0.8
2,685,737	-				-0.3
2,685,750	+				-0.1
2,685,789	-				+0.7
2,685,789	-				+0.5
2,685,807	+				+0.3
2,685,807	+				-2.0
2,685,807	+				-0.5
2,685,807	+				-0.1
2,685,815	-				+0.3
2,685,815	-				+0.3
2,685,817	+				+1.2
2,685,825	-				-0.9
2,685,981	-		Shew_2296	0.11	+0.3
2,686,091	-		Shew_2296	0.15	+0.7
2,686,169	+		Shew_2296	0.18	+0.4
2,686,587	-		Shew_2296	0.32	+0.1
2,686,799	+		Shew_2296	0.40	-0.2
2,686,812	-		Shew_2296	0.40	+4.5
2,686,902	+		Shew_2296	0.44	-0.2
2,686,990	-		Shew_2296	0.47	-0.5
2,687,334	+		Shew_2296	0.59	+0.9
2,687,374	+		Shew_2296	0.60	+0.7
2,687,382	-		Shew_2296	0.61	-2.8
2,688,142	-		Shew_2296	0.88	+0.1
2,688,856	-				-0.4
2,689,312	-		Shew_2297	0.35	-0.2
2,689,422	+		Shew_2297	0.42	-0.4