Strain Fitness in Shewanella loihica PV-4 around Shew_2006

Experiment: 5-Hydroxymethylfurfural 5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	5-Hydroxymethylfurfural 5 mM
2,317,735	+		Shew_2005	0.39	+0.3
2,317,873	+		Shew_2005	0.49	+0.9
2,317,897	+		Shew_2005	0.51	+0.3
2,317,925	+		Shew_2005	0.53	+0.4
2,317,933	-		Shew_2005	0.54	-0.3
2,318,141	-		Shew_2005	0.70	+0.1
2,318,157	+		Shew_2005	0.71	+0.2
2,318,207	-		Shew_2005	0.75	-0.2
2,318,374	+		Shew_2005	0.87	-0.1
2,318,382	-		Shew_2005	0.88	+0.1
2,318,491	+				-0.0
2,318,496	+				+0.3
2,318,557	-				+0.3
2,318,589	-				+0.3
2,318,842	+		Shew_2006	0.42	-0.8
2,318,922	+		Shew_2006	0.56	-0.5