Strain Fitness in Shewanella loihica PV-4 around Shew_1998

Experiment: 5-Hydroxymethylfurfural 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_1996 and Shew_1997 overlap by 23 nucleotidesShew_1997 and Shew_1998 are separated by 90 nucleotidesShew_1998 and Shew_1999 are separated by 62 nucleotides Shew_1996: Shew_1996 - hypothetical protein (RefSeq), at 2,307,800 to 2,308,423 _1996 Shew_1997: Shew_1997 - bax protein, putative (RefSeq), at 2,308,401 to 2,309,273 _1997 Shew_1998: Shew_1998 - protein of unknown function UPF0052 and CofD (RefSeq), at 2,309,364 to 2,310,275 _1998 Shew_1999: Shew_1999 - aromatic amino acid aminotransferase (RefSeq), at 2,310,338 to 2,311,531 _1999 Position (kb) 2309 2310 2311Strain fitness (log2 ratio) -1 0 1at 2309.834 kb on - strand, within Shew_1998at 2310.407 kb on - strandat 2310.849 kb on + strand, within Shew_1999

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Per-strain Table

Position Strand Gene LocusTag Fraction 5-Hydroxymethylfurfural 5 mM
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2,309,834 - Shew_1998 0.52 -0.6
2,310,407 - -0.4
2,310,849 + Shew_1999 0.43 -0.1

Or see this region's nucleotide sequence